cyanobase » Prochlorococcus marinus str. MIT 9123

Prochlorococcus marinus str. MIT 9123

Summary

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Data source name GCA_000759935.1
Full name Prochlorococcus marinus str. MIT 9123 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAK01000015 307,275 403
JNAK01000014 211,983 239
JNAK01000002 160,909 184
JNAK01000010 141,916 178
JNAK01000013 137,374 176
JNAK01000005 116,820 155
JNAK01000009 106,892 139
JNAK01000008 97,073 98
JNAK01000011 95,611 116
JNAK01000001 81,655 72
JNAK01000003 70,540 81
JNAK01000004 53,405 53
JNAK01000006 47,787 50
JNAK01000012 29,069 35
JNAK01000007 22,293 21
JNAK01000017 8,070 8
JNAK01000016 7,417 8
JNAK01000018 1,659 4
Total 1,697,748 2,020
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000759935.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000759935.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000759935.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759935.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759935.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759935.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759935.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759935.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759935.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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