cyanobase » Prochlorococcus marinus str. MIT 9116

Prochlorococcus marinus str. MIT 9116

Summary

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Data source name GCA_000759865.1
Full name Prochlorococcus marinus str. MIT 9116 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAJ01000018 250,154 284
JNAJ01000017 216,306 261
JNAJ01000004 203,351 209
JNAJ01000013 134,814 151
JNAJ01000016 117,620 140
JNAJ01000008 91,266 139
JNAJ01000012 87,753 99
JNAJ01000011 77,584 87
JNAJ01000014 73,821 109
JNAJ01000003 71,200 107
JNAJ01000005 61,814 52
JNAJ01000006 59,353 61
JNAJ01000009 50,796 45
JNAJ01000015 48,081 51
JNAJ01000010 47,017 53
JNAJ01000007 43,203 46
JNAJ01000002 23,665 40
JNAJ01000001 22,291 41
JNAJ01000020 1,486 2
JNAJ01000021 1,369 3
JNAJ01000022 1,231 3
JNAJ01000019 1,223 2
Total 1,685,398 1,985
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000759865.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000759865.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000759865.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759865.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759865.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759865.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759865.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759865.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759865.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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