cyanobase » Prochlorococcus marinus str. MIT 9107

Prochlorococcus marinus str. MIT 9107

Summary

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Data source name GCA_000759855.1
Full name Prochlorococcus marinus str. MIT 9107 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAI01000010 322,433 355
JNAI01000009 307,314 401
JNAI01000006 219,447 244
JNAI01000003 170,362 202
JNAI01000007 140,096 175
JNAI01000001 136,550 133
JNAI01000002 123,755 152
JNAI01000008 116,737 153
JNAI01000004 87,773 100
JNAI01000005 63,942 67
JNAI01000011 5,422 11
JNAI01000013 4,943 8
JNAI01000012 1,163 1
Total 1,699,937 2,002
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000759855.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000759855.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000759855.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759855.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759855.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759855.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759855.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759855.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759855.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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