cyanobase » Prochlorococcus marinus str. MIT 9107

Prochlorococcus marinus str. MIT 9107

Summary

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Data source name GCA_000759855.1
Full name Prochlorococcus marinus str. MIT 9107
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAI01000010 322,433 355
JNAI01000009 307,314 401
JNAI01000006 219,447 244
JNAI01000003 170,362 202
JNAI01000007 140,096 175
JNAI01000001 136,550 133
JNAI01000002 123,755 152
JNAI01000008 116,737 153
JNAI01000004 87,773 100
JNAI01000005 63,942 67
JNAI01000011 5,422 11
JNAI01000013 4,943 8
JNAI01000012 1,163 1
Total 1,699,937 2,002
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000759855.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000759855.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000759855.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000759855.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759855.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759855.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759855.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759855.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759855.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759855.1/genes/interpro.txt (File format)

MicrobeBase