cyanobase » Myxosarcina sp. GI1

Myxosarcina sp. GI1

Summary

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Data source name GCA_000756305.1
Full name Myxosarcina sp. GI1 External
Taxonomy Lineage Cyanobacteria; Pleurocapsales; Myxosarcina.

Genome Information

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Chromosomes
Name Size (bp) Genes
JRFE01000014 822,003 0
JRFE01000024 479,896 0
JRFE01000026 375,199 0
JRFE01000006 341,602 0
JRFE01000022 314,457 0
JRFE01000017 293,206 0
JRFE01000016 281,131 0
JRFE01000019 250,313 0
JRFE01000015 229,068 0
JRFE01000001 195,043 0
JRFE01000010 180,728 0
JRFE01000058 175,150 0
JRFE01000003 168,543 0
JRFE01000028 165,195 0
JRFE01000032 161,491 0
JRFE01000025 151,858 0
JRFE01000023 150,202 0
JRFE01000050 150,016 0
JRFE01000012 127,880 0
JRFE01000007 127,420 0
JRFE01000034 123,264 0
JRFE01000009 121,024 0
JRFE01000060 116,633 0
JRFE01000013 115,453 0
JRFE01000004 110,534 0
JRFE01000052 100,394 0
JRFE01000029 100,052 0
JRFE01000043 91,105 0
JRFE01000055 90,826 0
JRFE01000057 88,260 0
JRFE01000061 85,603 0
JRFE01000051 81,554 0
JRFE01000011 71,538 0
JRFE01000008 64,400 0
JRFE01000035 55,407 0
JRFE01000020 47,200 0
JRFE01000054 37,616 0
JRFE01000047 31,573 0
JRFE01000033 30,632 0
JRFE01000059 29,055 0
JRFE01000062 28,573 0
JRFE01000042 27,626 0
JRFE01000037 25,209 0
JRFE01000045 20,569 0
JRFE01000063 20,014 0
JRFE01000049 19,826 0
JRFE01000046 19,780 0
JRFE01000064 15,793 0
JRFE01000002 15,038 0
JRFE01000065 12,838 0
JRFE01000066 11,901 0
JRFE01000041 11,176 0
JRFE01000048 10,916 0
JRFE01000039 10,718 0
JRFE01000067 10,095 0
JRFE01000068 9,499 0
JRFE01000031 9,037 0
JRFE01000027 8,737 0
JRFE01000005 7,595 0
JRFE01000030 7,063 0
JRFE01000044 6,815 0
JRFE01000036 2,999 0
JRFE01000069 2,989 0
JRFE01000056 2,834 0
JRFE01000070 2,829 0
JRFE01000071 2,124 0
JRFE01000021 1,961 0
JRFE01000072 1,788 0
JRFE01000073 1,785 0
JRFE01000038 1,640 0
JRFE01000040 1,595 0
JRFE01000074 1,487 0
JRFE01000075 1,480 0
JRFE01000076 1,354 0
JRFE01000053 1,132 0
JRFE01000018 520 0
Total 7,069,859 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000756305.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000756305.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000756305.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000756305.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000756305.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000756305.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000756305.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000756305.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000756305.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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