cyanobase » Candidatus Atelocyanobacterium thalassa isolate SIO64986

Candidatus Atelocyanobacterium thalassa isolate SIO64986

Summary

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Data source name GCA_000737945.1
Full name Candidatus Atelocyanobacterium thalassa isolate SIO64986 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Candidatus Atelocyanobacterium.

Genome Information

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Chromosomes
Name Size (bp) Genes
JPSP01000001 249,164 200
JPSP01000002 154,985 128
JPSP01000003 151,741 122
JPSP01000004 131,360 130
JPSP01000005 73,988 70
JPSP01000006 72,707 58
JPSP01000007 69,964 61
JPSP01000008 64,055 54
JPSP01000009 58,418 48
JPSP01000010 54,977 55
JPSP01000011 50,747 51
JPSP01000012 49,442 44
JPSP01000013 47,257 42
JPSP01000014 45,868 41
JPSP01000015 43,770 38
JPSP01000016 36,607 26
JPSP01000017 22,727 20
JPSP01000018 13,989 12
JPSP01000019 13,442 12
JPSP01000020 9,146 8
JPSP01000021 7,271 5
JPSP01000022 6,603 6
JPSP01000023 5,190 5
JPSP01000024 4,662 5
JPSP01000025 4,162 4
JPSP01000026 3,810 4
JPSP01000027 3,575 2
JPSP01000028 2,374 4
JPSP01000029 2,322 2
JPSP01000030 2,194 3
JPSP01000031 2,166 3
JPSP01000032 2,032 2
JPSP01000033 1,870 1
JPSP01000034 1,794 2
JPSP01000035 1,645 2
JPSP01000036 1,633 1
JPSP01000037 1,573 1
JPSP01000038 1,529 3
JPSP01000039 1,521 1
JPSP01000040 1,512 2
JPSP01000041 1,454 2
JPSP01000042 1,450 2
JPSP01000043 1,323 2
JPSP01000044 1,048 1
JPSP01000045 1,022 1
JPSP01000046 947 1
JPSP01000047 825 1
JPSP01000048 821 1
JPSP01000049 750 1
JPSP01000050 705 2
JPSP01000051 687 1
JPSP01000052 675 2
Total 1,485,499 1,295
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000737945.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000737945.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000737945.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000737945.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000737945.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000737945.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000737945.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000737945.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000737945.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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