cyanobase » Synechococcus sp. NKBG042902

Synechococcus sp. NKBG042902

Summary

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Data source name GCA_000715475.1
Full name Synechococcus sp. NKBG042902 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
BAWS01000001 274,433 0
BAWS01000002 225,341 0
BAWS01000003 206,356 0
BAWS01000004 187,235 0
BAWS01000005 180,607 0
BAWS01000006 167,714 0
BAWS01000007 161,950 0
BAWS01000008 161,521 0
BAWS01000009 129,528 0
BAWS01000010 119,830 0
BAWS01000011 108,716 0
BAWS01000012 107,018 0
BAWS01000013 103,506 0
BAWS01000014 98,345 0
BAWS01000015 91,657 0
BAWS01000016 89,320 0
BAWS01000017 76,565 0
BAWS01000018 75,625 0
BAWS01000019 63,145 0
BAWS01000020 59,494 0
BAWS01000021 48,004 0
BAWS01000022 42,394 0
BAWS01000023 38,572 0
BAWS01000024 37,450 0
BAWS01000025 36,318 0
BAWS01000026 32,644 0
BAWS01000027 30,522 0
BAWS01000028 26,995 0
BAWS01000029 26,190 0
BAWS01000030 24,548 0
BAWS01000031 23,922 0
BAWS01000032 21,177 0
BAWS01000033 20,411 0
BAWS01000034 18,785 0
BAWS01000035 17,038 0
BAWS01000036 16,661 0
BAWS01000037 13,312 0
BAWS01000038 12,363 0
BAWS01000039 10,893 0
BAWS01000040 10,682 0
BAWS01000041 10,337 0
BAWS01000042 9,879 0
BAWS01000047 9,357 0
BAWS01000043 8,713 0
BAWS01000044 8,246 0
BAWS01000045 7,001 0
BAWS01000046 6,048 0
BAWS01000048 5,520 0
BAWS01000049 5,149 0
BAWS01000050 5,079 0
BAWS01000051 4,921 0
BAWS01000052 4,311 0
BAWS01000053 3,434 0
BAWS01000054 3,290 0
BAWS01000055 2,939 0
BAWS01000057 2,693 0
BAWS01000056 2,556 0
BAWS01000058 2,333 0
BAWS01000059 2,300 0
BAWS01000060 1,902 0
BAWS01000061 1,647 0
BAWS01000062 1,387 0
BAWS01000063 1,325 0
BAWS01000064 1,235 0
BAWS01000065 1,179 0
BAWS01000066 1,120 0
BAWS01000067 1,081 0
BAWS01000068 1,012 0
BAWS01000069 1,005 0
BAWS01000070 915 0
BAWS01000071 914 0
BAWS01000072 739 0
BAWS01000073 687 0
BAWS01000075 649 0
BAWS01000074 646 0
BAWS01000076 640 0
BAWS01000077 503 0
Total 3,319,479 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000715475.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000715475.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000715475.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000715475.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000715475.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000715475.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000715475.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000715475.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000715475.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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