cyanobase » Cyanobium sp. CACIAM 14

Cyanobium sp. CACIAM 14

Summary

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Data source name GCA_000708525.1
Full name Cyanobium sp. CACIAM 14 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.

Genome Information

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Chromosomes
Name Size (bp) Genes
JMRP01000001 403,256 378
JMRP01000002 185,224 164
JMRP01000003 177,870 176
JMRP01000004 169,713 160
JMRP01000005 122,273 115
JMRP01000006 101,908 101
JMRP01000007 99,835 91
JMRP01000008 82,820 82
JMRP01000009 82,599 78
JMRP01000010 71,794 80
JMRP01000011 67,076 49
JMRP01000012 61,937 59
JMRP01000013 61,382 64
JMRP01000014 59,004 64
JMRP01000015 58,925 46
JMRP01000016 57,753 50
JMRP01000017 54,471 48
JMRP01000018 54,013 51
JMRP01000019 50,789 35
JMRP01000020 49,886 51
JMRP01000021 49,199 46
JMRP01000022 45,313 33
JMRP01000023 44,587 43
JMRP01000024 43,359 34
JMRP01000025 40,264 28
JMRP01000026 38,069 38
JMRP01000027 36,924 37
JMRP01000028 36,791 35
JMRP01000029 35,314 28
JMRP01000030 34,750 35
JMRP01000031 33,185 42
JMRP01000032 32,615 33
JMRP01000033 31,609 31
JMRP01000034 31,158 37
JMRP01000035 31,039 25
JMRP01000036 30,910 16
JMRP01000037 29,780 28
JMRP01000038 27,661 29
JMRP01000039 27,365 22
JMRP01000040 27,149 29
JMRP01000041 26,139 33
JMRP01000042 25,850 25
JMRP01000043 24,371 11
JMRP01000044 24,157 27
JMRP01000045 23,909 20
JMRP01000046 23,265 21
JMRP01000047 19,395 17
JMRP01000048 16,656 11
JMRP01000049 16,627 15
JMRP01000050 15,930 10
JMRP01000051 14,738 13
JMRP01000052 14,303 13
JMRP01000053 13,120 11
JMRP01000054 12,958 11
JMRP01000055 12,913 13
JMRP01000056 12,881 16
JMRP01000057 12,868 16
JMRP01000058 12,625 10
JMRP01000059 12,543 12
JMRP01000060 11,936 5
JMRP01000061 11,173 11
JMRP01000062 10,182 6
JMRP01000063 9,609 9
JMRP01000064 8,210 7
JMRP01000065 7,764 6
JMRP01000066 7,675 6
JMRP01000067 7,534 8
JMRP01000068 7,097 7
JMRP01000069 5,629 6
JMRP01000070 5,588 5
JMRP01000071 5,275 4
Total 3,212,489 2,976
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000708525.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000708525.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000708525.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000708525.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000708525.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000708525.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000708525.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000708525.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000708525.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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