cyanobase » Prochlorococcus sp. scB245a_521N5

Prochlorococcus sp. scB245a_521N5

Summary

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Data source name GCA_000635875.1
Full name Prochlorococcus sp. scB245a_521N5 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFOC01000004 132,432 0
JFOC01000284 130,565 0
JFOC01000368 56,858 0
JFOC01000336 40,482 0
JFOC01000306 30,890 0
JFOC01000288 27,902 0
JFOC01000005 23,085 0
JFOC01000250 19,628 0
JFOC01000337 16,655 0
JFOC01000282 16,539 0
JFOC01000006 15,491 0
JFOC01000003 15,112 0
JFOC01000290 11,547 0
JFOC01000339 11,473 0
JFOC01000307 10,404 0
JFOC01000009 8,871 0
JFOC01000283 8,158 0
JFOC01000029 5,716 0
JFOC01000413 5,438 0
JFOC01000280 4,328 0
JFOC01000372 4,264 0
JFOC01000289 4,126 0
JFOC01000223 3,877 0
JFOC01000291 3,614 0
JFOC01000065 3,511 0
JFOC01000335 3,326 0
JFOC01000030 3,325 0
JFOC01000232 3,225 0
JFOC01000407 3,218 0
JFOC01000286 2,823 0
JFOC01000374 2,754 0
JFOC01000219 2,742 0
JFOC01000077 2,446 0
JFOC01000010 2,383 0
JFOC01000068 2,302 0
JFOC01000333 2,261 0
JFOC01000281 2,258 0
JFOC01000089 2,244 0
JFOC01000066 1,966 0
JFOC01000390 1,924 0
JFOC01000389 1,844 0
JFOC01000224 1,831 0
JFOC01000007 1,791 0
JFOC01000338 1,768 0
JFOC01000235 1,754 0
JFOC01000308 1,729 0
JFOC01000096 1,655 0
JFOC01000373 1,620 0
JFOC01000203 1,612 0
JFOC01000245 1,607 0
JFOC01000091 1,568 0
JFOC01000332 1,450 0
JFOC01000045 1,424 0
JFOC01000423 1,287 0
JFOC01000008 1,272 0
JFOC01000012 1,196 0
JFOC01000375 1,189 0
JFOC01000391 1,182 0
JFOC01000206 1,175 0
JFOC01000213 1,168 0
JFOC01000394 1,155 0
JFOC01000398 1,155 0
JFOC01000208 1,116 0
JFOC01000380 1,112 0
JFOC01000228 1,111 0
JFOC01000351 1,078 0
JFOC01000027 1,055 0
JFOC01000102 1,051 0
JFOC01000233 1,039 0
JFOC01000293 1,004 0
JFOC01000079 974 0
JFOC01000082 960 0
JFOC01000016 958 0
JFOC01000073 955 0
JFOC01000239 940 0
JFOC01000137 939 0
JFOC01000085 933 0
JFOC01000062 906 0
JFOC01000393 895 0
JFOC01000021 858 0
JFOC01000084 851 0
JFOC01000090 847 0
JFOC01000097 822 0
JFOC01000392 820 0
JFOC01000214 816 0
JFOC01000323 786 0
JFOC01000025 786 0
JFOC01000188 779 0
JFOC01000154 776 0
JFOC01000402 771 0
JFOC01000360 771 0
JFOC01000158 759 0
JFOC01000058 752 0
JFOC01000101 747 0
JFOC01000356 735 0
JFOC01000331 730 0
JFOC01000028 720 0
JFOC01000399 720 0
JFOC01000229 717 0
JFOC01000359 713 0
JFOC01000026 707 0
JFOC01000093 695 0
JFOC01000246 694 0
JFOC01000087 690 0
JFOC01000225 685 0
JFOC01000067 684 0
JFOC01000349 682 0
JFOC01000013 682 0
JFOC01000205 677 0
JFOC01000347 677 0
JFOC01000292 670 0
JFOC01000350 669 0
JFOC01000182 665 0
JFOC01000422 663 0
JFOC01000330 659 0
JFOC01000414 657 0
JFOC01000266 651 0
JFOC01000083 645 0
JFOC01000157 644 0
JFOC01000191 643 0
JFOC01000251 639 0
JFOC01000069 637 0
JFOC01000183 626 0
JFOC01000231 623 0
JFOC01000201 622 0
JFOC01000200 620 0
JFOC01000033 620 0
JFOC01000132 604 0
JFOC01000118 602 0
JFOC01000064 595 0
JFOC01000369 571 0
JFOC01000060 565 0
JFOC01000357 564 0
JFOC01000329 563 0
JFOC01000136 562 0
JFOC01000081 561 0
JFOC01000415 561 0
JFOC01000022 553 0
JFOC01000042 553 0
JFOC01000140 550 0
JFOC01000095 547 0
JFOC01000104 541 0
JFOC01000309 531 0
JFOC01000234 529 0
JFOC01000226 518 0
JFOC01000220 514 0
JFOC01000018 511 0
JFOC01000109 507 0
JFOC01000049 506 0
JFOC01000099 504 0
JFOC01000378 503 0
JFOC01000011 496 0
JFOC01000418 490 0
JFOC01000207 489 0
JFOC01000076 486 0
JFOC01000311 486 0
JFOC01000408 486 0
JFOC01000247 485 0
JFOC01000404 485 0
JFOC01000395 481 0
JFOC01000417 478 0
JFOC01000310 474 0
JFOC01000155 471 0
JFOC01000198 468 0
JFOC01000276 467 0
JFOC01000057 461 0
JFOC01000244 455 0
JFOC01000363 455 0
JFOC01000171 454 0
JFOC01000072 451 0
JFOC01000024 446 0
JFOC01000274 443 0
JFOC01000268 443 0
JFOC01000396 442 0
JFOC01000094 442 0
JFOC01000211 441 0
JFOC01000420 440 0
JFOC01000139 438 0
JFOC01000212 436 0
JFOC01000192 435 0
JFOC01000074 433 0
JFOC01000108 432 0
JFOC01000189 431 0
JFOC01000424 431 0
JFOC01000170 431 0
JFOC01000186 428 0
JFOC01000240 428 0
JFOC01000014 427 0
JFOC01000146 426 0
JFOC01000151 426 0
JFOC01000141 424 0
JFOC01000135 422 0
JFOC01000138 421 0
JFOC01000302 418 0
JFOC01000134 417 0
JFOC01000143 417 0
JFOC01000401 412 0
JFOC01000130 408 0
JFOC01000287 405 0
JFOC01000159 401 0
JFOC01000017 401 0
JFOC01000147 400 0
JFOC01000243 397 0
JFOC01000249 395 0
JFOC01000300 395 0
JFOC01000115 390 0
JFOC01000071 388 0
JFOC01000263 387 0
JFOC01000181 386 0
JFOC01000406 384 0
JFOC01000358 380 0
JFOC01000397 377 0
JFOC01000120 375 0
JFOC01000297 374 0
JFOC01000088 373 0
JFOC01000035 372 0
JFOC01000321 372 0
JFOC01000265 365 0
JFOC01000405 362 0
JFOC01000152 361 0
JFOC01000038 357 0
JFOC01000162 355 0
JFOC01000046 353 0
JFOC01000061 353 0
JFOC01000180 351 0
JFOC01000386 349 0
JFOC01000105 347 0
JFOC01000037 347 0
JFOC01000382 347 0
JFOC01000103 346 0
JFOC01000161 345 0
JFOC01000269 342 0
JFOC01000133 340 0
JFOC01000185 337 0
JFOC01000318 336 0
JFOC01000150 335 0
JFOC01000345 335 0
JFOC01000034 334 0
JFOC01000174 332 0
JFOC01000400 332 0
JFOC01000381 326 0
JFOC01000199 324 0
JFOC01000325 324 0
JFOC01000355 324 0
JFOC01000238 321 0
JFOC01000221 319 0
JFOC01000216 319 0
JFOC01000416 319 0
JFOC01000113 317 0
JFOC01000122 316 0
JFOC01000298 315 0
JFOC01000253 312 0
JFOC01000160 311 0
JFOC01000114 310 0
JFOC01000385 309 0
JFOC01000075 309 0
JFOC01000362 308 0
JFOC01000043 307 0
JFOC01000272 307 0
JFOC01000053 307 0
JFOC01000119 305 0
JFOC01000352 304 0
JFOC01000412 304 0
JFOC01000260 301 0
JFOC01000177 301 0
JFOC01000259 301 0
JFOC01000354 300 0
JFOC01000222 300 0
JFOC01000117 300 0
JFOC01000167 299 0
JFOC01000020 298 0
JFOC01000383 296 0
JFOC01000169 296 0
JFOC01000237 295 0
JFOC01000314 295 0
JFOC01000242 294 0
JFOC01000040 294 0
JFOC01000379 294 0
JFOC01000039 294 0
JFOC01000343 292 0
JFOC01000195 292 0
JFOC01000411 291 0
JFOC01000278 290 0
JFOC01000184 290 0
JFOC01000052 289 0
JFOC01000063 289 0
JFOC01000241 286 0
JFOC01000267 285 0
JFOC01000112 285 0
JFOC01000107 284 0
JFOC01000277 282 0
JFOC01000236 281 0
JFOC01000348 281 0
JFOC01000156 280 0
JFOC01000319 279 0
JFOC01000421 277 0
JFOC01000204 277 0
JFOC01000110 276 0
JFOC01000015 276 0
JFOC01000376 276 0
JFOC01000296 274 0
JFOC01000344 274 0
JFOC01000254 273 0
JFOC01000273 273 0
JFOC01000257 273 0
JFOC01000123 272 0
JFOC01000409 271 0
JFOC01000002 270 0
JFOC01000322 270 0
JFOC01000100 269 0
JFOC01000041 268 0
JFOC01000078 265 0
JFOC01000194 265 0
JFOC01000149 265 0
JFOC01000410 264 0
JFOC01000324 262 0
JFOC01000255 261 0
JFOC01000320 261 0
JFOC01000387 260 0
JFOC01000248 259 0
JFOC01000315 258 0
JFOC01000055 258 0
JFOC01000172 258 0
JFOC01000365 258 0
JFOC01000371 257 0
JFOC01000304 255 0
JFOC01000218 254 0
JFOC01000166 253 0
JFOC01000361 253 0
JFOC01000301 253 0
JFOC01000313 253 0
JFOC01000059 251 0
JFOC01000425 251 0
JFOC01000116 250 0
JFOC01000173 250 0
JFOC01000048 250 0
JFOC01000129 249 0
JFOC01000092 249 0
JFOC01000144 248 0
JFOC01000131 247 0
JFOC01000125 247 0
JFOC01000070 246 0
JFOC01000275 246 0
JFOC01000036 245 0
JFOC01000367 244 0
JFOC01000299 244 0
JFOC01000153 242 0
JFOC01000054 242 0
JFOC01000031 241 0
JFOC01000258 240 0
JFOC01000312 239 0
JFOC01000019 239 0
JFOC01000086 239 0
JFOC01000305 239 0
JFOC01000127 239 0
JFOC01000197 238 0
JFOC01000340 237 0
JFOC01000124 236 0
JFOC01000190 236 0
JFOC01000327 236 0
JFOC01000285 236 0
JFOC01000176 235 0
JFOC01000256 235 0
JFOC01000227 234 0
JFOC01000210 234 0
JFOC01000346 234 0
JFOC01000217 232 0
JFOC01000341 232 0
JFOC01000148 231 0
JFOC01000342 231 0
JFOC01000126 231 0
JFOC01000353 230 0
JFOC01000128 230 0
JFOC01000294 229 0
JFOC01000023 229 0
JFOC01000047 229 0
JFOC01000295 229 0
JFOC01000303 228 0
JFOC01000056 227 0
JFOC01000044 227 0
JFOC01000388 227 0
JFOC01000111 227 0
JFOC01000145 226 0
JFOC01000080 226 0
JFOC01000334 226 0
JFOC01000370 225 0
JFOC01000215 225 0
JFOC01000187 224 0
JFOC01000270 222 0
JFOC01000193 220 0
JFOC01000168 219 0
JFOC01000230 219 0
JFOC01000377 219 0
JFOC01000264 219 0
JFOC01000262 218 0
JFOC01000051 218 0
JFOC01000050 217 0
JFOC01000196 217 0
JFOC01000142 217 0
JFOC01000165 216 0
JFOC01000279 216 0
JFOC01000384 215 0
JFOC01000178 214 0
JFOC01000001 214 0
JFOC01000261 214 0
JFOC01000317 213 0
JFOC01000098 213 0
JFOC01000202 212 0
JFOC01000419 212 0
JFOC01000316 211 0
JFOC01000209 209 0
JFOC01000366 209 0
JFOC01000175 207 0
JFOC01000271 207 0
JFOC01000106 206 0
JFOC01000163 206 0
JFOC01000252 205 0
JFOC01000326 204 0
JFOC01000328 203 0
JFOC01000121 203 0
JFOC01000164 202 0
JFOC01000032 201 0
JFOC01000403 201 0
JFOC01000179 200 0
JFOC01000364 200 0
Total 830,606 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635875.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635875.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635875.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635875.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635875.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635875.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635875.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635875.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635875.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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