cyanobase » Prochlorococcus sp. scB245a_521M10

Prochlorococcus sp. scB245a_521M10

Summary

? | +/- | Top
Data source name GCA_000635855.1
Full name Prochlorococcus sp. scB245a_521M10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFOA01000078 108,784 0
JFOA01000121 102,092 0
JFOA01000086 72,164 0
JFOA01000189 62,652 0
JFOA01000185 62,465 0
JFOA01000179 52,928 0
JFOA01000023 45,751 0
JFOA01000186 44,602 0
JFOA01000127 41,381 0
JFOA01000125 35,970 0
JFOA01000026 35,165 0
JFOA01000039 33,414 0
JFOA01000019 28,909 0
JFOA01000084 23,098 0
JFOA01000013 21,752 0
JFOA01000184 20,129 0
JFOA01000010 19,731 0
JFOA01000037 17,108 0
JFOA01000126 16,959 0
JFOA01000009 16,804 0
JFOA01000178 16,540 0
JFOA01000085 15,741 0
JFOA01000038 13,089 0
JFOA01000203 12,565 0
JFOA01000190 12,187 0
JFOA01000083 12,042 0
JFOA01000177 9,286 0
JFOA01000082 8,900 0
JFOA01000188 8,762 0
JFOA01000022 8,554 0
JFOA01000020 8,225 0
JFOA01000200 7,823 0
JFOA01000011 6,269 0
JFOA01000007 5,767 0
JFOA01000151 5,609 0
JFOA01000220 3,767 0
JFOA01000079 3,690 0
JFOA01000006 3,258 0
JFOA01000012 3,106 0
JFOA01000018 2,874 0
JFOA01000176 2,393 0
JFOA01000008 2,227 0
JFOA01000025 2,108 0
JFOA01000102 1,981 0
JFOA01000051 1,917 0
JFOA01000221 1,890 0
JFOA01000208 1,786 0
JFOA01000258 1,669 0
JFOA01000054 1,654 0
JFOA01000053 1,647 0
JFOA01000014 1,608 0
JFOA01000192 1,600 0
JFOA01000149 1,600 0
JFOA01000015 1,575 0
JFOA01000005 1,553 0
JFOA01000045 1,481 0
JFOA01000142 1,399 0
JFOA01000181 1,251 0
JFOA01000044 1,222 0
JFOA01000129 1,126 0
JFOA01000243 1,040 0
JFOA01000131 1,032 0
JFOA01000106 1,010 0
JFOA01000207 980 0
JFOA01000107 973 0
JFOA01000050 947 0
JFOA01000016 942 0
JFOA01000222 938 0
JFOA01000152 908 0
JFOA01000036 906 0
JFOA01000100 902 0
JFOA01000087 866 0
JFOA01000130 863 0
JFOA01000137 836 0
JFOA01000211 833 0
JFOA01000128 831 0
JFOA01000225 798 0
JFOA01000067 786 0
JFOA01000108 778 0
JFOA01000214 728 0
JFOA01000154 722 0
JFOA01000124 702 0
JFOA01000088 682 0
JFOA01000136 672 0
JFOA01000257 664 0
JFOA01000259 655 0
JFOA01000095 649 0
JFOA01000068 645 0
JFOA01000105 623 0
JFOA01000197 615 0
JFOA01000180 614 0
JFOA01000227 592 0
JFOA01000123 590 0
JFOA01000260 586 0
JFOA01000048 583 0
JFOA01000213 577 0
JFOA01000191 574 0
JFOA01000081 570 0
JFOA01000040 560 0
JFOA01000049 544 0
JFOA01000092 543 0
JFOA01000065 537 0
JFOA01000217 523 0
JFOA01000116 504 0
JFOA01000034 496 0
JFOA01000210 494 0
JFOA01000043 485 0
JFOA01000109 484 0
JFOA01000148 481 0
JFOA01000094 477 0
JFOA01000069 473 0
JFOA01000097 466 0
JFOA01000061 463 0
JFOA01000223 462 0
JFOA01000224 448 0
JFOA01000104 435 0
JFOA01000231 431 0
JFOA01000055 431 0
JFOA01000165 423 0
JFOA01000058 420 0
JFOA01000170 418 0
JFOA01000166 418 0
JFOA01000159 412 0
JFOA01000199 411 0
JFOA01000118 409 0
JFOA01000033 408 0
JFOA01000157 397 0
JFOA01000238 397 0
JFOA01000160 394 0
JFOA01000120 392 0
JFOA01000064 389 0
JFOA01000153 386 0
JFOA01000101 385 0
JFOA01000226 374 0
JFOA01000173 369 0
JFOA01000209 367 0
JFOA01000244 366 0
JFOA01000071 365 0
JFOA01000245 365 0
JFOA01000143 364 0
JFOA01000114 359 0
JFOA01000254 352 0
JFOA01000212 345 0
JFOA01000089 344 0
JFOA01000122 343 0
JFOA01000162 341 0
JFOA01000133 336 0
JFOA01000046 325 0
JFOA01000076 324 0
JFOA01000230 322 0
JFOA01000233 320 0
JFOA01000182 320 0
JFOA01000247 318 0
JFOA01000147 310 0
JFOA01000060 307 0
JFOA01000096 307 0
JFOA01000206 307 0
JFOA01000103 306 0
JFOA01000134 305 0
JFOA01000195 304 0
JFOA01000234 304 0
JFOA01000030 302 0
JFOA01000215 300 0
JFOA01000115 298 0
JFOA01000029 297 0
JFOA01000099 295 0
JFOA01000145 294 0
JFOA01000075 293 0
JFOA01000229 292 0
JFOA01000175 292 0
JFOA01000072 292 0
JFOA01000024 289 0
JFOA01000155 285 0
JFOA01000119 284 0
JFOA01000169 284 0
JFOA01000237 284 0
JFOA01000156 283 0
JFOA01000171 282 0
JFOA01000066 280 0
JFOA01000059 279 0
JFOA01000135 279 0
JFOA01000261 279 0
JFOA01000111 278 0
JFOA01000216 277 0
JFOA01000198 274 0
JFOA01000242 273 0
JFOA01000091 273 0
JFOA01000163 272 0
JFOA01000062 271 0
JFOA01000132 271 0
JFOA01000253 271 0
JFOA01000150 271 0
JFOA01000041 270 0
JFOA01000183 267 0
JFOA01000001 267 0
JFOA01000201 266 0
JFOA01000167 265 0
JFOA01000146 259 0
JFOA01000246 259 0
JFOA01000235 257 0
JFOA01000112 255 0
JFOA01000017 255 0
JFOA01000140 254 0
JFOA01000252 253 0
JFOA01000256 250 0
JFOA01000172 250 0
JFOA01000047 250 0
JFOA01000158 249 0
JFOA01000141 247 0
JFOA01000202 247 0
JFOA01000187 246 0
JFOA01000093 244 0
JFOA01000098 244 0
JFOA01000003 241 0
JFOA01000070 241 0
JFOA01000239 240 0
JFOA01000117 239 0
JFOA01000063 239 0
JFOA01000073 238 0
JFOA01000251 237 0
JFOA01000161 236 0
JFOA01000035 236 0
JFOA01000032 234 0
JFOA01000250 234 0
JFOA01000248 233 0
JFOA01000002 233 0
JFOA01000021 230 0
JFOA01000168 230 0
JFOA01000174 229 0
JFOA01000110 228 0
JFOA01000228 228 0
JFOA01000241 226 0
JFOA01000057 226 0
JFOA01000204 224 0
JFOA01000080 221 0
JFOA01000232 220 0
JFOA01000077 220 0
JFOA01000139 219 0
JFOA01000138 218 0
JFOA01000031 216 0
JFOA01000240 215 0
JFOA01000194 214 0
JFOA01000074 214 0
JFOA01000218 213 0
JFOA01000027 213 0
JFOA01000042 210 0
JFOA01000196 210 0
JFOA01000249 210 0
JFOA01000144 210 0
JFOA01000164 209 0
JFOA01000219 209 0
JFOA01000255 208 0
JFOA01000052 208 0
JFOA01000236 206 0
JFOA01000004 206 0
JFOA01000113 205 0
JFOA01000090 204 0
JFOA01000205 203 0
JFOA01000028 202 0
JFOA01000056 201 0
JFOA01000193 200 0
Total 1,142,710 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000635855.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635855.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635855.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635855.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635855.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635855.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635855.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635855.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635855.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer