cyanobase » Prochlorococcus sp. scB245a_521B10

Prochlorococcus sp. scB245a_521B10

Summary

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Data source name GCA_000635835.1
Full name Prochlorococcus sp. scB245a_521B10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNX01000105 213,362 0
JFNX01000050 167,714 0
JFNX01000066 147,959 0
JFNX01000048 122,344 0
JFNX01000003 118,958 0
JFNX01000191 88,232 0
JFNX01000001 85,133 0
JFNX01000073 66,892 0
JFNX01000076 62,966 0
JFNX01000068 52,801 0
JFNX01000153 46,345 0
JFNX01000075 38,714 0
JFNX01000141 38,323 0
JFNX01000142 18,105 0
JFNX01000002 14,425 0
JFNX01000069 13,197 0
JFNX01000070 12,665 0
JFNX01000140 12,615 0
JFNX01000007 10,894 0
JFNX01000190 9,696 0
JFNX01000008 8,883 0
JFNX01000006 8,812 0
JFNX01000183 8,803 0
JFNX01000149 8,495 0
JFNX01000195 7,355 0
JFNX01000067 6,859 0
JFNX01000107 6,114 0
JFNX01000196 5,125 0
JFNX01000071 5,024 0
JFNX01000152 4,932 0
JFNX01000189 4,748 0
JFNX01000182 4,224 0
JFNX01000156 3,962 0
JFNX01000110 3,922 0
JFNX01000010 3,859 0
JFNX01000074 3,785 0
JFNX01000178 3,436 0
JFNX01000150 3,334 0
JFNX01000049 3,164 0
JFNX01000187 2,975 0
JFNX01000199 2,280 0
JFNX01000004 2,150 0
JFNX01000185 2,115 0
JFNX01000155 1,956 0
JFNX01000079 1,754 0
JFNX01000046 1,713 0
JFNX01000064 1,693 0
JFNX01000198 1,643 0
JFNX01000106 1,603 0
JFNX01000011 1,557 0
JFNX01000197 1,530 0
JFNX01000138 1,422 0
JFNX01000042 1,405 0
JFNX01000059 1,399 0
JFNX01000154 1,359 0
JFNX01000083 1,309 0
JFNX01000151 1,263 0
JFNX01000111 1,263 0
JFNX01000148 1,250 0
JFNX01000192 1,197 0
JFNX01000170 1,191 0
JFNX01000201 1,175 0
JFNX01000136 1,161 0
JFNX01000085 1,120 0
JFNX01000044 1,093 0
JFNX01000157 1,056 0
JFNX01000202 1,021 0
JFNX01000018 976 0
JFNX01000146 956 0
JFNX01000080 948 0
JFNX01000109 924 0
JFNX01000058 913 0
JFNX01000020 911 0
JFNX01000015 909 0
JFNX01000186 868 0
JFNX01000009 840 0
JFNX01000039 807 0
JFNX01000200 774 0
JFNX01000056 771 0
JFNX01000123 757 0
JFNX01000021 752 0
JFNX01000175 748 0
JFNX01000108 745 0
JFNX01000045 742 0
JFNX01000040 741 0
JFNX01000160 736 0
JFNX01000144 717 0
JFNX01000180 713 0
JFNX01000177 706 0
JFNX01000034 690 0
JFNX01000091 682 0
JFNX01000072 675 0
JFNX01000207 675 0
JFNX01000120 668 0
JFNX01000184 641 0
JFNX01000081 637 0
JFNX01000205 629 0
JFNX01000133 617 0
JFNX01000078 614 0
JFNX01000101 600 0
JFNX01000171 598 0
JFNX01000173 585 0
JFNX01000016 582 0
JFNX01000013 577 0
JFNX01000181 570 0
JFNX01000216 557 0
JFNX01000179 550 0
JFNX01000162 540 0
JFNX01000158 540 0
JFNX01000065 539 0
JFNX01000139 537 0
JFNX01000062 530 0
JFNX01000019 523 0
JFNX01000218 523 0
JFNX01000060 520 0
JFNX01000165 518 0
JFNX01000217 511 0
JFNX01000115 510 0
JFNX01000055 501 0
JFNX01000159 498 0
JFNX01000176 475 0
JFNX01000100 474 0
JFNX01000122 464 0
JFNX01000121 464 0
JFNX01000102 461 0
JFNX01000057 451 0
JFNX01000112 444 0
JFNX01000063 443 0
JFNX01000147 442 0
JFNX01000129 426 0
JFNX01000166 423 0
JFNX01000134 418 0
JFNX01000030 416 0
JFNX01000086 413 0
JFNX01000209 410 0
JFNX01000077 404 0
JFNX01000214 403 0
JFNX01000053 399 0
JFNX01000208 399 0
JFNX01000137 399 0
JFNX01000103 390 0
JFNX01000094 390 0
JFNX01000128 385 0
JFNX01000043 384 0
JFNX01000172 377 0
JFNX01000124 376 0
JFNX01000012 375 0
JFNX01000135 372 0
JFNX01000087 371 0
JFNX01000031 368 0
JFNX01000169 366 0
JFNX01000117 361 0
JFNX01000113 350 0
JFNX01000022 350 0
JFNX01000038 349 0
JFNX01000005 344 0
JFNX01000093 339 0
JFNX01000174 335 0
JFNX01000047 335 0
JFNX01000024 326 0
JFNX01000118 324 0
JFNX01000161 315 0
JFNX01000090 310 0
JFNX01000164 310 0
JFNX01000097 308 0
JFNX01000127 306 0
JFNX01000023 302 0
JFNX01000167 302 0
JFNX01000084 301 0
JFNX01000193 295 0
JFNX01000145 294 0
JFNX01000131 286 0
JFNX01000088 280 0
JFNX01000054 280 0
JFNX01000036 275 0
JFNX01000211 275 0
JFNX01000194 272 0
JFNX01000168 269 0
JFNX01000116 267 0
JFNX01000014 266 0
JFNX01000126 263 0
JFNX01000204 261 0
JFNX01000035 260 0
JFNX01000041 256 0
JFNX01000114 255 0
JFNX01000029 252 0
JFNX01000026 251 0
JFNX01000089 250 0
JFNX01000104 244 0
JFNX01000027 242 0
JFNX01000132 241 0
JFNX01000212 241 0
JFNX01000025 239 0
JFNX01000032 239 0
JFNX01000125 238 0
JFNX01000052 234 0
JFNX01000213 231 0
JFNX01000037 230 0
JFNX01000163 227 0
JFNX01000119 226 0
JFNX01000061 225 0
JFNX01000051 222 0
JFNX01000099 221 0
JFNX01000082 218 0
JFNX01000092 216 0
JFNX01000210 215 0
JFNX01000095 215 0
JFNX01000130 215 0
JFNX01000017 213 0
JFNX01000203 213 0
JFNX01000188 205 0
JFNX01000143 204 0
JFNX01000098 203 0
JFNX01000206 202 0
JFNX01000096 200 0
JFNX01000215 200 0
JFNX01000033 200 0
JFNX01000028 200 0
Total 1,555,095 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635835.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635835.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635835.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635835.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635835.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635835.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635835.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635835.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635835.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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