cyanobase » Prochlorococcus sp. scB245a_520E22

Prochlorococcus sp. scB245a_520E22

Summary

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Data source name GCA_000635795.1
Full name Prochlorococcus sp. scB245a_520E22 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNS01000315 187,619 0
JFNS01000040 133,298 0
JFNS01000267 90,874 0
JFNS01000121 81,261 0
JFNS01000317 61,810 0
JFNS01000247 53,274 0
JFNS01000147 47,053 0
JFNS01000257 38,301 0
JFNS01000094 27,611 0
JFNS01000141 23,242 0
JFNS01000042 20,442 0
JFNS01000249 19,060 0
JFNS01000256 18,902 0
JFNS01000120 17,425 0
JFNS01000248 16,185 0
JFNS01000093 13,743 0
JFNS01000246 12,834 0
JFNS01000134 10,012 0
JFNS01000312 9,199 0
JFNS01000314 9,174 0
JFNS01000142 9,109 0
JFNS01000316 8,632 0
JFNS01000260 7,678 0
JFNS01000098 7,371 0
JFNS01000041 5,838 0
JFNS01000049 5,437 0
JFNS01000222 5,368 0
JFNS01000258 5,157 0
JFNS01000056 5,157 0
JFNS01000254 5,063 0
JFNS01000259 4,576 0
JFNS01000255 4,377 0
JFNS01000015 4,320 0
JFNS01000097 3,896 0
JFNS01000096 3,385 0
JFNS01000065 3,252 0
JFNS01000213 2,724 0
JFNS01000149 2,493 0
JFNS01000133 2,468 0
JFNS01000057 2,315 0
JFNS01000209 2,248 0
JFNS01000062 2,247 0
JFNS01000212 2,167 0
JFNS01000324 2,105 0
JFNS01000322 2,033 0
JFNS01000048 2,018 0
JFNS01000323 1,995 0
JFNS01000001 1,968 0
JFNS01000216 1,871 0
JFNS01000148 1,821 0
JFNS01000194 1,591 0
JFNS01000073 1,551 0
JFNS01000218 1,462 0
JFNS01000132 1,445 0
JFNS01000302 1,439 0
JFNS01000071 1,349 0
JFNS01000095 1,333 0
JFNS01000325 1,291 0
JFNS01000210 1,231 0
JFNS01000063 1,114 0
JFNS01000123 1,111 0
JFNS01000181 1,073 0
JFNS01000211 1,031 0
JFNS01000192 1,019 0
JFNS01000131 1,007 0
JFNS01000099 1,006 0
JFNS01000185 971 0
JFNS01000250 970 0
JFNS01000009 943 0
JFNS01000214 927 0
JFNS01000036 906 0
JFNS01000187 874 0
JFNS01000224 873 0
JFNS01000205 853 0
JFNS01000060 847 0
JFNS01000115 824 0
JFNS01000126 814 0
JFNS01000082 761 0
JFNS01000023 753 0
JFNS01000116 735 0
JFNS01000326 722 0
JFNS01000191 708 0
JFNS01000264 706 0
JFNS01000092 699 0
JFNS01000128 694 0
JFNS01000034 689 0
JFNS01000055 687 0
JFNS01000151 667 0
JFNS01000017 665 0
JFNS01000219 663 0
JFNS01000300 662 0
JFNS01000223 661 0
JFNS01000089 652 0
JFNS01000053 650 0
JFNS01000006 648 0
JFNS01000226 640 0
JFNS01000007 638 0
JFNS01000292 637 0
JFNS01000137 636 0
JFNS01000058 633 0
JFNS01000271 622 0
JFNS01000298 613 0
JFNS01000050 597 0
JFNS01000221 587 0
JFNS01000090 586 0
JFNS01000150 576 0
JFNS01000197 573 0
JFNS01000114 572 0
JFNS01000118 569 0
JFNS01000018 560 0
JFNS01000085 556 0
JFNS01000101 555 0
JFNS01000244 552 0
JFNS01000106 544 0
JFNS01000044 542 0
JFNS01000204 535 0
JFNS01000008 531 0
JFNS01000251 531 0
JFNS01000091 530 0
JFNS01000124 522 0
JFNS01000003 517 0
JFNS01000196 516 0
JFNS01000327 511 0
JFNS01000184 508 0
JFNS01000334 507 0
JFNS01000140 506 0
JFNS01000035 504 0
JFNS01000155 497 0
JFNS01000207 494 0
JFNS01000303 491 0
JFNS01000112 490 0
JFNS01000253 488 0
JFNS01000270 485 0
JFNS01000038 473 0
JFNS01000051 469 0
JFNS01000005 468 0
JFNS01000261 463 0
JFNS01000077 462 0
JFNS01000180 459 0
JFNS01000043 459 0
JFNS01000054 457 0
JFNS01000228 456 0
JFNS01000152 450 0
JFNS01000227 449 0
JFNS01000100 447 0
JFNS01000291 445 0
JFNS01000022 437 0
JFNS01000287 437 0
JFNS01000236 435 0
JFNS01000195 431 0
JFNS01000189 429 0
JFNS01000285 427 0
JFNS01000159 426 0
JFNS01000167 419 0
JFNS01000296 418 0
JFNS01000069 415 0
JFNS01000177 414 0
JFNS01000229 414 0
JFNS01000109 411 0
JFNS01000193 410 0
JFNS01000010 409 0
JFNS01000173 405 0
JFNS01000329 402 0
JFNS01000278 400 0
JFNS01000198 399 0
JFNS01000235 395 0
JFNS01000305 394 0
JFNS01000024 394 0
JFNS01000263 392 0
JFNS01000086 389 0
JFNS01000262 387 0
JFNS01000220 381 0
JFNS01000290 378 0
JFNS01000232 377 0
JFNS01000045 376 0
JFNS01000231 375 0
JFNS01000066 374 0
JFNS01000125 373 0
JFNS01000130 370 0
JFNS01000265 368 0
JFNS01000304 368 0
JFNS01000183 367 0
JFNS01000004 366 0
JFNS01000059 363 0
JFNS01000237 363 0
JFNS01000021 361 0
JFNS01000295 359 0
JFNS01000156 359 0
JFNS01000032 358 0
JFNS01000076 357 0
JFNS01000206 357 0
JFNS01000243 351 0
JFNS01000122 349 0
JFNS01000336 348 0
JFNS01000087 347 0
JFNS01000064 347 0
JFNS01000319 347 0
JFNS01000088 346 0
JFNS01000039 346 0
JFNS01000293 345 0
JFNS01000153 345 0
JFNS01000199 344 0
JFNS01000027 343 0
JFNS01000215 340 0
JFNS01000310 337 0
JFNS01000020 336 0
JFNS01000102 336 0
JFNS01000225 336 0
JFNS01000019 334 0
JFNS01000203 334 0
JFNS01000274 333 0
JFNS01000160 330 0
JFNS01000139 330 0
JFNS01000113 328 0
JFNS01000289 325 0
JFNS01000308 325 0
JFNS01000239 322 0
JFNS01000328 322 0
JFNS01000068 317 0
JFNS01000277 315 0
JFNS01000208 314 0
JFNS01000238 312 0
JFNS01000202 310 0
JFNS01000129 310 0
JFNS01000332 309 0
JFNS01000138 308 0
JFNS01000186 307 0
JFNS01000182 305 0
JFNS01000301 304 0
JFNS01000014 303 0
JFNS01000169 303 0
JFNS01000002 301 0
JFNS01000234 300 0
JFNS01000080 300 0
JFNS01000188 299 0
JFNS01000190 299 0
JFNS01000037 295 0
JFNS01000294 294 0
JFNS01000117 294 0
JFNS01000335 293 0
JFNS01000072 291 0
JFNS01000026 286 0
JFNS01000276 285 0
JFNS01000164 284 0
JFNS01000283 284 0
JFNS01000272 283 0
JFNS01000337 282 0
JFNS01000135 282 0
JFNS01000011 280 0
JFNS01000033 279 0
JFNS01000083 279 0
JFNS01000074 278 0
JFNS01000163 278 0
JFNS01000111 278 0
JFNS01000331 277 0
JFNS01000103 274 0
JFNS01000280 271 0
JFNS01000311 270 0
JFNS01000178 270 0
JFNS01000338 267 0
JFNS01000174 266 0
JFNS01000081 265 0
JFNS01000200 265 0
JFNS01000143 264 0
JFNS01000281 263 0
JFNS01000127 261 0
JFNS01000079 259 0
JFNS01000070 258 0
JFNS01000179 258 0
JFNS01000166 258 0
JFNS01000242 258 0
JFNS01000029 257 0
JFNS01000145 257 0
JFNS01000016 255 0
JFNS01000201 255 0
JFNS01000119 255 0
JFNS01000107 254 0
JFNS01000273 254 0
JFNS01000075 254 0
JFNS01000052 254 0
JFNS01000046 252 0
JFNS01000175 251 0
JFNS01000282 250 0
JFNS01000240 250 0
JFNS01000279 247 0
JFNS01000333 243 0
JFNS01000230 241 0
JFNS01000012 241 0
JFNS01000084 241 0
JFNS01000318 240 0
JFNS01000104 240 0
JFNS01000061 240 0
JFNS01000252 240 0
JFNS01000031 239 0
JFNS01000105 239 0
JFNS01000110 238 0
JFNS01000171 236 0
JFNS01000161 234 0
JFNS01000233 234 0
JFNS01000307 232 0
JFNS01000030 231 0
JFNS01000306 230 0
JFNS01000157 230 0
JFNS01000165 230 0
JFNS01000168 229 0
JFNS01000144 228 0
JFNS01000013 228 0
JFNS01000146 227 0
JFNS01000266 227 0
JFNS01000025 226 0
JFNS01000330 226 0
JFNS01000078 225 0
JFNS01000241 222 0
JFNS01000154 221 0
JFNS01000028 221 0
JFNS01000268 219 0
JFNS01000217 218 0
JFNS01000321 217 0
JFNS01000313 217 0
JFNS01000275 216 0
JFNS01000172 215 0
JFNS01000067 215 0
JFNS01000170 213 0
JFNS01000309 212 0
JFNS01000176 208 0
JFNS01000047 208 0
JFNS01000162 208 0
JFNS01000108 207 0
JFNS01000245 206 0
JFNS01000158 204 0
JFNS01000320 203 0
JFNS01000299 202 0
JFNS01000136 201 0
JFNS01000297 201 0
JFNS01000286 201 0
JFNS01000288 201 0
JFNS01000269 201 0
JFNS01000284 200 0
Total 1,136,820 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635795.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635795.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635795.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635795.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635795.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635795.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635795.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635795.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635795.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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