cyanobase » Prochlorococcus sp. scB245a_519O11

Prochlorococcus sp. scB245a_519O11

Summary

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Data source name GCA_000635775.1
Full name Prochlorococcus sp. scB245a_519O11 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNO01000054 259,715 0
JFNO01000214 102,356 0
JFNO01000095 95,014 0
JFNO01000031 81,565 0
JFNO01000046 64,997 0
JFNO01000001 62,842 0
JFNO01000073 62,466 0
JFNO01000052 57,232 0
JFNO01000047 54,133 0
JFNO01000058 37,798 0
JFNO01000213 37,652 0
JFNO01000048 34,086 0
JFNO01000177 26,893 0
JFNO01000176 19,787 0
JFNO01000057 15,265 0
JFNO01000055 14,606 0
JFNO01000056 14,219 0
JFNO01000215 13,395 0
JFNO01000070 13,135 0
JFNO01000030 12,299 0
JFNO01000021 11,478 0
JFNO01000212 11,019 0
JFNO01000049 9,328 0
JFNO01000106 8,759 0
JFNO01000023 7,722 0
JFNO01000053 7,482 0
JFNO01000075 6,763 0
JFNO01000050 6,696 0
JFNO01000029 5,915 0
JFNO01000062 4,310 0
JFNO01000230 3,219 0
JFNO01000186 3,183 0
JFNO01000097 3,109 0
JFNO01000063 3,054 0
JFNO01000104 2,920 0
JFNO01000071 2,802 0
JFNO01000032 2,327 0
JFNO01000066 2,311 0
JFNO01000059 2,102 0
JFNO01000022 2,097 0
JFNO01000064 1,863 0
JFNO01000185 1,657 0
JFNO01000072 1,589 0
JFNO01000189 1,565 0
JFNO01000234 1,487 0
JFNO01000190 1,471 0
JFNO01000198 1,459 0
JFNO01000221 1,312 0
JFNO01000178 1,263 0
JFNO01000061 1,224 0
JFNO01000175 1,204 0
JFNO01000236 1,194 0
JFNO01000220 1,189 0
JFNO01000020 1,171 0
JFNO01000033 1,150 0
JFNO01000101 1,125 0
JFNO01000035 1,124 0
JFNO01000197 1,119 0
JFNO01000019 1,079 0
JFNO01000076 1,047 0
JFNO01000226 1,024 0
JFNO01000133 988 0
JFNO01000045 980 0
JFNO01000196 964 0
JFNO01000136 952 0
JFNO01000103 931 0
JFNO01000079 924 0
JFNO01000074 922 0
JFNO01000209 901 0
JFNO01000235 883 0
JFNO01000096 866 0
JFNO01000222 861 0
JFNO01000043 859 0
JFNO01000202 852 0
JFNO01000137 834 0
JFNO01000187 832 0
JFNO01000229 820 0
JFNO01000060 806 0
JFNO01000151 728 0
JFNO01000201 706 0
JFNO01000100 703 0
JFNO01000153 702 0
JFNO01000228 699 0
JFNO01000011 693 0
JFNO01000127 690 0
JFNO01000026 665 0
JFNO01000199 648 0
JFNO01000134 620 0
JFNO01000154 599 0
JFNO01000237 597 0
JFNO01000188 595 0
JFNO01000217 591 0
JFNO01000069 582 0
JFNO01000078 531 0
JFNO01000102 529 0
JFNO01000155 523 0
JFNO01000211 518 0
JFNO01000148 511 0
JFNO01000150 509 0
JFNO01000194 506 0
JFNO01000145 501 0
JFNO01000091 486 0
JFNO01000144 482 0
JFNO01000093 478 0
JFNO01000125 469 0
JFNO01000210 463 0
JFNO01000141 462 0
JFNO01000174 457 0
JFNO01000169 449 0
JFNO01000089 447 0
JFNO01000004 440 0
JFNO01000195 439 0
JFNO01000165 434 0
JFNO01000183 431 0
JFNO01000204 431 0
JFNO01000105 430 0
JFNO01000002 423 0
JFNO01000005 418 0
JFNO01000200 417 0
JFNO01000182 417 0
JFNO01000160 410 0
JFNO01000110 410 0
JFNO01000227 410 0
JFNO01000157 408 0
JFNO01000042 402 0
JFNO01000034 401 0
JFNO01000080 400 0
JFNO01000225 399 0
JFNO01000067 386 0
JFNO01000017 384 0
JFNO01000077 379 0
JFNO01000140 375 0
JFNO01000120 375 0
JFNO01000008 371 0
JFNO01000135 369 0
JFNO01000107 367 0
JFNO01000108 362 0
JFNO01000139 362 0
JFNO01000044 361 0
JFNO01000146 361 0
JFNO01000086 360 0
JFNO01000223 358 0
JFNO01000164 358 0
JFNO01000018 354 0
JFNO01000166 349 0
JFNO01000123 343 0
JFNO01000013 342 0
JFNO01000068 339 0
JFNO01000147 338 0
JFNO01000007 338 0
JFNO01000118 336 0
JFNO01000129 329 0
JFNO01000208 328 0
JFNO01000003 325 0
JFNO01000088 324 0
JFNO01000028 324 0
JFNO01000218 317 0
JFNO01000232 308 0
JFNO01000041 304 0
JFNO01000161 298 0
JFNO01000114 297 0
JFNO01000014 296 0
JFNO01000142 295 0
JFNO01000051 292 0
JFNO01000082 289 0
JFNO01000224 289 0
JFNO01000192 287 0
JFNO01000159 282 0
JFNO01000081 281 0
JFNO01000083 279 0
JFNO01000087 279 0
JFNO01000116 278 0
JFNO01000193 278 0
JFNO01000006 276 0
JFNO01000009 275 0
JFNO01000025 275 0
JFNO01000090 272 0
JFNO01000162 271 0
JFNO01000128 269 0
JFNO01000122 268 0
JFNO01000010 267 0
JFNO01000121 264 0
JFNO01000024 264 0
JFNO01000181 264 0
JFNO01000085 261 0
JFNO01000040 261 0
JFNO01000191 260 0
JFNO01000094 260 0
JFNO01000065 260 0
JFNO01000016 257 0
JFNO01000098 256 0
JFNO01000158 254 0
JFNO01000112 253 0
JFNO01000092 252 0
JFNO01000038 252 0
JFNO01000238 251 0
JFNO01000149 249 0
JFNO01000203 246 0
JFNO01000173 246 0
JFNO01000130 245 0
JFNO01000027 240 0
JFNO01000156 240 0
JFNO01000180 240 0
JFNO01000039 237 0
JFNO01000131 237 0
JFNO01000012 236 0
JFNO01000132 236 0
JFNO01000207 233 0
JFNO01000163 233 0
JFNO01000216 232 0
JFNO01000152 231 0
JFNO01000206 230 0
JFNO01000115 229 0
JFNO01000119 228 0
JFNO01000171 226 0
JFNO01000184 224 0
JFNO01000143 224 0
JFNO01000109 224 0
JFNO01000117 223 0
JFNO01000219 223 0
JFNO01000015 222 0
JFNO01000231 222 0
JFNO01000084 219 0
JFNO01000170 214 0
JFNO01000111 213 0
JFNO01000138 209 0
JFNO01000126 207 0
JFNO01000233 207 0
JFNO01000179 207 0
JFNO01000205 206 0
JFNO01000172 206 0
JFNO01000124 204 0
JFNO01000167 203 0
JFNO01000037 202 0
JFNO01000168 202 0
JFNO01000113 201 0
JFNO01000036 201 0
JFNO01000099 200 0
Total 1,284,446 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635775.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635775.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635775.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635775.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635775.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635775.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635775.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635775.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635775.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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