cyanobase » Prochlorococcus sp. scB245a_519G16

Prochlorococcus sp. scB245a_519G16

Summary

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Data source name GCA_000635755.1
Full name Prochlorococcus sp. scB245a_519G16 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNM01000345 131,025 0
JFNM01000244 118,523 0
JFNM01000038 106,530 0
JFNM01000245 87,202 0
JFNM01000246 86,468 0
JFNM01000296 76,112 0
JFNM01000148 65,262 0
JFNM01000177 63,541 0
JFNM01000071 57,734 0
JFNM01000214 50,946 0
JFNM01000009 43,840 0
JFNM01000050 38,768 0
JFNM01000147 24,110 0
JFNM01000274 23,146 0
JFNM01000008 22,877 0
JFNM01000138 20,853 0
JFNM01000125 13,535 0
JFNM01000124 13,248 0
JFNM01000146 10,257 0
JFNM01000136 9,572 0
JFNM01000344 9,124 0
JFNM01000005 8,099 0
JFNM01000039 7,231 0
JFNM01000275 7,210 0
JFNM01000346 7,067 0
JFNM01000051 6,967 0
JFNM01000068 6,446 0
JFNM01000348 4,812 0
JFNM01000336 4,798 0
JFNM01000290 4,654 0
JFNM01000007 4,571 0
JFNM01000164 4,532 0
JFNM01000357 3,807 0
JFNM01000243 3,803 0
JFNM01000093 2,990 0
JFNM01000271 2,750 0
JFNM01000010 2,680 0
JFNM01000341 2,558 0
JFNM01000350 2,291 0
JFNM01000096 2,139 0
JFNM01000249 2,094 0
JFNM01000094 1,957 0
JFNM01000012 1,855 0
JFNM01000349 1,845 0
JFNM01000213 1,817 0
JFNM01000247 1,789 0
JFNM01000006 1,728 0
JFNM01000067 1,659 0
JFNM01000288 1,442 0
JFNM01000118 1,418 0
JFNM01000027 1,367 0
JFNM01000101 1,293 0
JFNM01000282 1,275 0
JFNM01000066 1,152 0
JFNM01000069 1,081 0
JFNM01000334 1,062 0
JFNM01000337 1,050 0
JFNM01000166 1,042 0
JFNM01000080 1,031 0
JFNM01000103 1,003 0
JFNM01000054 978 0
JFNM01000353 971 0
JFNM01000130 968 0
JFNM01000347 955 0
JFNM01000234 951 0
JFNM01000023 946 0
JFNM01000011 944 0
JFNM01000095 942 0
JFNM01000162 933 0
JFNM01000338 932 0
JFNM01000084 904 0
JFNM01000112 901 0
JFNM01000092 894 0
JFNM01000126 860 0
JFNM01000335 818 0
JFNM01000070 818 0
JFNM01000270 813 0
JFNM01000055 809 0
JFNM01000298 798 0
JFNM01000159 785 0
JFNM01000013 784 0
JFNM01000024 774 0
JFNM01000261 767 0
JFNM01000260 757 0
JFNM01000329 742 0
JFNM01000211 727 0
JFNM01000328 717 0
JFNM01000047 715 0
JFNM01000131 713 0
JFNM01000135 701 0
JFNM01000343 700 0
JFNM01000297 700 0
JFNM01000238 689 0
JFNM01000330 684 0
JFNM01000295 679 0
JFNM01000276 673 0
JFNM01000089 656 0
JFNM01000160 654 0
JFNM01000117 652 0
JFNM01000072 650 0
JFNM01000163 648 0
JFNM01000327 641 0
JFNM01000143 638 0
JFNM01000267 634 0
JFNM01000119 627 0
JFNM01000040 621 0
JFNM01000289 615 0
JFNM01000046 606 0
JFNM01000115 605 0
JFNM01000286 602 0
JFNM01000099 593 0
JFNM01000129 587 0
JFNM01000237 582 0
JFNM01000332 581 0
JFNM01000342 580 0
JFNM01000326 574 0
JFNM01000060 574 0
JFNM01000262 569 0
JFNM01000158 568 0
JFNM01000319 563 0
JFNM01000299 562 0
JFNM01000339 551 0
JFNM01000041 548 0
JFNM01000132 533 0
JFNM01000240 531 0
JFNM01000250 526 0
JFNM01000281 522 0
JFNM01000082 514 0
JFNM01000320 513 0
JFNM01000280 509 0
JFNM01000208 507 0
JFNM01000284 506 0
JFNM01000278 503 0
JFNM01000108 495 0
JFNM01000212 489 0
JFNM01000184 488 0
JFNM01000021 482 0
JFNM01000033 481 0
JFNM01000241 481 0
JFNM01000196 478 0
JFNM01000165 477 0
JFNM01000307 476 0
JFNM01000029 476 0
JFNM01000197 475 0
JFNM01000322 470 0
JFNM01000090 469 0
JFNM01000091 468 0
JFNM01000154 467 0
JFNM01000102 463 0
JFNM01000151 462 0
JFNM01000004 456 0
JFNM01000025 452 0
JFNM01000003 448 0
JFNM01000114 443 0
JFNM01000254 438 0
JFNM01000235 437 0
JFNM01000219 423 0
JFNM01000198 422 0
JFNM01000259 421 0
JFNM01000036 421 0
JFNM01000265 419 0
JFNM01000065 413 0
JFNM01000180 413 0
JFNM01000189 411 0
JFNM01000161 408 0
JFNM01000110 405 0
JFNM01000016 402 0
JFNM01000306 401 0
JFNM01000183 397 0
JFNM01000248 397 0
JFNM01000221 396 0
JFNM01000145 394 0
JFNM01000170 393 0
JFNM01000294 391 0
JFNM01000049 389 0
JFNM01000109 387 0
JFNM01000104 380 0
JFNM01000030 377 0
JFNM01000331 377 0
JFNM01000045 374 0
JFNM01000266 374 0
JFNM01000178 373 0
JFNM01000242 371 0
JFNM01000127 370 0
JFNM01000018 368 0
JFNM01000079 366 0
JFNM01000098 362 0
JFNM01000218 361 0
JFNM01000015 360 0
JFNM01000239 358 0
JFNM01000062 358 0
JFNM01000323 357 0
JFNM01000139 354 0
JFNM01000324 353 0
JFNM01000085 352 0
JFNM01000105 348 0
JFNM01000087 348 0
JFNM01000258 344 0
JFNM01000181 343 0
JFNM01000285 342 0
JFNM01000128 342 0
JFNM01000152 341 0
JFNM01000083 340 0
JFNM01000017 339 0
JFNM01000199 339 0
JFNM01000179 338 0
JFNM01000352 333 0
JFNM01000300 332 0
JFNM01000195 328 0
JFNM01000222 328 0
JFNM01000305 325 0
JFNM01000078 324 0
JFNM01000293 323 0
JFNM01000264 322 0
JFNM01000173 321 0
JFNM01000206 320 0
JFNM01000291 320 0
JFNM01000209 320 0
JFNM01000187 320 0
JFNM01000043 318 0
JFNM01000354 318 0
JFNM01000202 317 0
JFNM01000220 317 0
JFNM01000236 316 0
JFNM01000100 316 0
JFNM01000172 314 0
JFNM01000325 314 0
JFNM01000228 312 0
JFNM01000113 312 0
JFNM01000111 310 0
JFNM01000156 307 0
JFNM01000309 306 0
JFNM01000048 304 0
JFNM01000081 303 0
JFNM01000194 303 0
JFNM01000044 302 0
JFNM01000317 299 0
JFNM01000356 294 0
JFNM01000229 293 0
JFNM01000169 293 0
JFNM01000134 291 0
JFNM01000318 291 0
JFNM01000058 291 0
JFNM01000191 290 0
JFNM01000133 288 0
JFNM01000227 287 0
JFNM01000064 285 0
JFNM01000340 283 0
JFNM01000056 282 0
JFNM01000351 282 0
JFNM01000273 282 0
JFNM01000188 279 0
JFNM01000308 279 0
JFNM01000052 277 0
JFNM01000175 276 0
JFNM01000116 275 0
JFNM01000253 273 0
JFNM01000182 273 0
JFNM01000142 271 0
JFNM01000252 271 0
JFNM01000217 270 0
JFNM01000019 270 0
JFNM01000031 269 0
JFNM01000059 268 0
JFNM01000233 268 0
JFNM01000333 266 0
JFNM01000168 266 0
JFNM01000002 264 0
JFNM01000028 263 0
JFNM01000186 263 0
JFNM01000224 263 0
JFNM01000107 261 0
JFNM01000063 261 0
JFNM01000223 260 0
JFNM01000174 259 0
JFNM01000302 257 0
JFNM01000073 254 0
JFNM01000311 254 0
JFNM01000121 254 0
JFNM01000150 253 0
JFNM01000316 251 0
JFNM01000251 251 0
JFNM01000315 251 0
JFNM01000292 250 0
JFNM01000076 250 0
JFNM01000106 249 0
JFNM01000176 249 0
JFNM01000277 247 0
JFNM01000077 244 0
JFNM01000075 244 0
JFNM01000257 243 0
JFNM01000321 243 0
JFNM01000232 242 0
JFNM01000269 242 0
JFNM01000086 241 0
JFNM01000149 240 0
JFNM01000001 239 0
JFNM01000225 237 0
JFNM01000020 236 0
JFNM01000312 235 0
JFNM01000074 234 0
JFNM01000303 234 0
JFNM01000088 232 0
JFNM01000185 231 0
JFNM01000053 230 0
JFNM01000263 230 0
JFNM01000032 228 0
JFNM01000279 228 0
JFNM01000226 228 0
JFNM01000144 227 0
JFNM01000034 227 0
JFNM01000304 227 0
JFNM01000140 226 0
JFNM01000301 224 0
JFNM01000167 223 0
JFNM01000171 222 0
JFNM01000283 221 0
JFNM01000205 221 0
JFNM01000201 221 0
JFNM01000313 220 0
JFNM01000061 220 0
JFNM01000272 220 0
JFNM01000137 220 0
JFNM01000037 219 0
JFNM01000310 219 0
JFNM01000190 218 0
JFNM01000123 218 0
JFNM01000014 218 0
JFNM01000204 217 0
JFNM01000207 217 0
JFNM01000022 216 0
JFNM01000042 215 0
JFNM01000057 214 0
JFNM01000193 214 0
JFNM01000097 214 0
JFNM01000035 214 0
JFNM01000153 214 0
JFNM01000256 214 0
JFNM01000157 213 0
JFNM01000141 213 0
JFNM01000200 210 0
JFNM01000120 209 0
JFNM01000255 209 0
JFNM01000215 208 0
JFNM01000210 208 0
JFNM01000216 208 0
JFNM01000230 208 0
JFNM01000122 208 0
JFNM01000268 206 0
JFNM01000203 206 0
JFNM01000155 206 0
JFNM01000192 204 0
JFNM01000287 203 0
JFNM01000314 202 0
JFNM01000231 201 0
JFNM01000026 200 0
JFNM01000355 131 0
Total 1,310,233 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635755.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635755.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635755.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635755.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635755.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635755.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635755.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635755.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635755.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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