cyanobase » Prochlorococcus sp. scB245a_519D13

Prochlorococcus sp. scB245a_519D13

Summary

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Data source name GCA_000635735.1
Full name Prochlorococcus sp. scB245a_519D13 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNK01000387 190,651 0
JFNK01000257 165,707 0
JFNK01000033 149,503 0
JFNK01000001 105,227 0
JFNK01000342 74,789 0
JFNK01000309 68,708 0
JFNK01000272 58,433 0
JFNK01000377 32,114 0
JFNK01000304 30,989 0
JFNK01000298 30,580 0
JFNK01000031 29,215 0
JFNK01000071 23,542 0
JFNK01000310 19,117 0
JFNK01000248 13,941 0
JFNK01000295 11,731 0
JFNK01000301 10,825 0
JFNK01000390 10,387 0
JFNK01000389 9,946 0
JFNK01000321 9,736 0
JFNK01000148 9,076 0
JFNK01000396 8,908 0
JFNK01000280 7,878 0
JFNK01000299 7,813 0
JFNK01000378 7,423 0
JFNK01000343 7,165 0
JFNK01000300 6,917 0
JFNK01000392 6,793 0
JFNK01000344 5,438 0
JFNK01000362 4,919 0
JFNK01000273 4,778 0
JFNK01000385 4,642 0
JFNK01000040 4,374 0
JFNK01000256 4,297 0
JFNK01000159 3,997 0
JFNK01000381 3,810 0
JFNK01000175 3,653 0
JFNK01000405 3,613 0
JFNK01000412 3,453 0
JFNK01000388 3,364 0
JFNK01000393 3,068 0
JFNK01000150 3,030 0
JFNK01000168 3,001 0
JFNK01000368 2,951 0
JFNK01000146 2,946 0
JFNK01000149 2,936 0
JFNK01000302 2,825 0
JFNK01000408 2,803 0
JFNK01000297 2,773 0
JFNK01000315 2,758 0
JFNK01000281 2,276 0
JFNK01000176 2,274 0
JFNK01000067 2,134 0
JFNK01000145 2,132 0
JFNK01000147 2,102 0
JFNK01000045 2,058 0
JFNK01000323 2,055 0
JFNK01000303 2,053 0
JFNK01000020 2,029 0
JFNK01000016 1,981 0
JFNK01000316 1,975 0
JFNK01000177 1,966 0
JFNK01000277 1,934 0
JFNK01000386 1,924 0
JFNK01000192 1,905 0
JFNK01000061 1,886 0
JFNK01000296 1,873 0
JFNK01000236 1,855 0
JFNK01000322 1,732 0
JFNK01000274 1,683 0
JFNK01000064 1,641 0
JFNK01000261 1,638 0
JFNK01000032 1,597 0
JFNK01000158 1,590 0
JFNK01000030 1,587 0
JFNK01000324 1,584 0
JFNK01000294 1,563 0
JFNK01000044 1,530 0
JFNK01000155 1,469 0
JFNK01000043 1,418 0
JFNK01000188 1,391 0
JFNK01000354 1,383 0
JFNK01000046 1,369 0
JFNK01000048 1,342 0
JFNK01000404 1,325 0
JFNK01000314 1,323 0
JFNK01000056 1,309 0
JFNK01000409 1,309 0
JFNK01000334 1,302 0
JFNK01000137 1,266 0
JFNK01000018 1,260 0
JFNK01000017 1,233 0
JFNK01000241 1,232 0
JFNK01000238 1,203 0
JFNK01000028 1,175 0
JFNK01000336 1,173 0
JFNK01000179 1,131 0
JFNK01000153 1,120 0
JFNK01000160 1,108 0
JFNK01000156 1,073 0
JFNK01000269 1,072 0
JFNK01000215 1,056 0
JFNK01000356 1,056 0
JFNK01000326 1,056 0
JFNK01000394 1,050 0
JFNK01000320 1,045 0
JFNK01000178 1,024 0
JFNK01000391 1,018 0
JFNK01000331 1,016 0
JFNK01000066 1,000 0
JFNK01000076 999 0
JFNK01000167 981 0
JFNK01000059 975 0
JFNK01000418 962 0
JFNK01000041 961 0
JFNK01000275 952 0
JFNK01000384 952 0
JFNK01000136 950 0
JFNK01000263 948 0
JFNK01000196 944 0
JFNK01000262 913 0
JFNK01000328 891 0
JFNK01000374 890 0
JFNK01000264 858 0
JFNK01000318 845 0
JFNK01000239 840 0
JFNK01000371 837 0
JFNK01000246 832 0
JFNK01000237 831 0
JFNK01000128 827 0
JFNK01000406 822 0
JFNK01000268 809 0
JFNK01000351 803 0
JFNK01000047 800 0
JFNK01000190 796 0
JFNK01000201 789 0
JFNK01000376 789 0
JFNK01000425 785 0
JFNK01000370 784 0
JFNK01000065 771 0
JFNK01000197 767 0
JFNK01000411 755 0
JFNK01000360 755 0
JFNK01000135 751 0
JFNK01000245 747 0
JFNK01000084 725 0
JFNK01000057 724 0
JFNK01000357 723 0
JFNK01000337 723 0
JFNK01000062 713 0
JFNK01000161 713 0
JFNK01000395 707 0
JFNK01000270 703 0
JFNK01000313 696 0
JFNK01000249 690 0
JFNK01000282 679 0
JFNK01000072 677 0
JFNK01000400 671 0
JFNK01000151 667 0
JFNK01000240 654 0
JFNK01000114 642 0
JFNK01000051 635 0
JFNK01000382 635 0
JFNK01000208 633 0
JFNK01000078 632 0
JFNK01000271 611 0
JFNK01000019 606 0
JFNK01000258 603 0
JFNK01000081 600 0
JFNK01000252 585 0
JFNK01000212 584 0
JFNK01000070 567 0
JFNK01000312 564 0
JFNK01000074 564 0
JFNK01000346 562 0
JFNK01000373 558 0
JFNK01000340 556 0
JFNK01000211 553 0
JFNK01000068 549 0
JFNK01000103 548 0
JFNK01000195 543 0
JFNK01000209 543 0
JFNK01000372 531 0
JFNK01000134 531 0
JFNK01000079 529 0
JFNK01000350 527 0
JFNK01000029 524 0
JFNK01000121 522 0
JFNK01000021 520 0
JFNK01000034 517 0
JFNK01000093 511 0
JFNK01000060 508 0
JFNK01000133 507 0
JFNK01000358 505 0
JFNK01000227 503 0
JFNK01000333 502 0
JFNK01000327 501 0
JFNK01000361 491 0
JFNK01000058 484 0
JFNK01000214 483 0
JFNK01000118 482 0
JFNK01000230 479 0
JFNK01000279 475 0
JFNK01000260 471 0
JFNK01000250 471 0
JFNK01000355 469 0
JFNK01000090 464 0
JFNK01000213 460 0
JFNK01000154 459 0
JFNK01000419 454 0
JFNK01000330 451 0
JFNK01000037 450 0
JFNK01000345 447 0
JFNK01000210 445 0
JFNK01000242 443 0
JFNK01000232 442 0
JFNK01000225 442 0
JFNK01000224 440 0
JFNK01000220 439 0
JFNK01000091 438 0
JFNK01000352 437 0
JFNK01000162 436 0
JFNK01000244 435 0
JFNK01000339 433 0
JFNK01000143 432 0
JFNK01000039 430 0
JFNK01000305 430 0
JFNK01000365 429 0
JFNK01000247 428 0
JFNK01000218 427 0
JFNK01000193 427 0
JFNK01000132 424 0
JFNK01000173 421 0
JFNK01000080 421 0
JFNK01000410 418 0
JFNK01000157 418 0
JFNK01000278 417 0
JFNK01000184 414 0
JFNK01000221 413 0
JFNK01000023 412 0
JFNK01000100 408 0
JFNK01000199 407 0
JFNK01000235 407 0
JFNK01000329 407 0
JFNK01000163 405 0
JFNK01000307 405 0
JFNK01000426 400 0
JFNK01000226 398 0
JFNK01000231 396 0
JFNK01000311 386 0
JFNK01000122 385 0
JFNK01000206 384 0
JFNK01000022 383 0
JFNK01000171 382 0
JFNK01000088 381 0
JFNK01000108 379 0
JFNK01000286 377 0
JFNK01000035 375 0
JFNK01000099 371 0
JFNK01000332 369 0
JFNK01000353 368 0
JFNK01000349 368 0
JFNK01000359 363 0
JFNK01000222 363 0
JFNK01000200 362 0
JFNK01000420 357 0
JFNK01000083 353 0
JFNK01000198 345 0
JFNK01000172 342 0
JFNK01000165 342 0
JFNK01000174 340 0
JFNK01000183 339 0
JFNK01000375 339 0
JFNK01000234 339 0
JFNK01000364 337 0
JFNK01000015 333 0
JFNK01000002 333 0
JFNK01000009 331 0
JFNK01000289 331 0
JFNK01000253 330 0
JFNK01000094 330 0
JFNK01000401 330 0
JFNK01000013 328 0
JFNK01000283 326 0
JFNK01000050 325 0
JFNK01000054 325 0
JFNK01000347 325 0
JFNK01000169 325 0
JFNK01000251 324 0
JFNK01000170 323 0
JFNK01000089 321 0
JFNK01000123 321 0
JFNK01000116 320 0
JFNK01000038 319 0
JFNK01000036 319 0
JFNK01000284 319 0
JFNK01000085 317 0
JFNK01000398 315 0
JFNK01000126 312 0
JFNK01000292 311 0
JFNK01000319 308 0
JFNK01000223 308 0
JFNK01000265 307 0
JFNK01000152 306 0
JFNK01000202 306 0
JFNK01000139 306 0
JFNK01000259 305 0
JFNK01000144 304 0
JFNK01000229 304 0
JFNK01000363 304 0
JFNK01000025 302 0
JFNK01000127 300 0
JFNK01000097 300 0
JFNK01000243 299 0
JFNK01000055 299 0
JFNK01000104 294 0
JFNK01000106 292 0
JFNK01000119 290 0
JFNK01000403 289 0
JFNK01000003 289 0
JFNK01000008 286 0
JFNK01000141 286 0
JFNK01000111 285 0
JFNK01000004 284 0
JFNK01000053 284 0
JFNK01000024 281 0
JFNK01000186 280 0
JFNK01000063 278 0
JFNK01000216 278 0
JFNK01000397 276 0
JFNK01000182 275 0
JFNK01000042 271 0
JFNK01000194 271 0
JFNK01000102 267 0
JFNK01000422 267 0
JFNK01000207 266 0
JFNK01000006 265 0
JFNK01000217 264 0
JFNK01000142 264 0
JFNK01000130 262 0
JFNK01000138 260 0
JFNK01000341 260 0
JFNK01000112 255 0
JFNK01000113 254 0
JFNK01000082 254 0
JFNK01000267 254 0
JFNK01000291 254 0
JFNK01000325 254 0
JFNK01000096 253 0
JFNK01000073 253 0
JFNK01000026 252 0
JFNK01000266 252 0
JFNK01000317 251 0
JFNK01000285 250 0
JFNK01000164 250 0
JFNK01000424 250 0
JFNK01000005 250 0
JFNK01000255 248 0
JFNK01000011 246 0
JFNK01000407 246 0
JFNK01000383 243 0
JFNK01000086 242 0
JFNK01000087 241 0
JFNK01000399 239 0
JFNK01000185 239 0
JFNK01000010 238 0
JFNK01000276 238 0
JFNK01000014 237 0
JFNK01000069 237 0
JFNK01000049 237 0
JFNK01000287 236 0
JFNK01000140 236 0
JFNK01000110 234 0
JFNK01000124 234 0
JFNK01000052 234 0
JFNK01000075 234 0
JFNK01000415 234 0
JFNK01000098 231 0
JFNK01000379 229 0
JFNK01000417 228 0
JFNK01000107 227 0
JFNK01000105 227 0
JFNK01000228 226 0
JFNK01000095 226 0
JFNK01000129 226 0
JFNK01000367 225 0
JFNK01000366 224 0
JFNK01000338 224 0
JFNK01000191 223 0
JFNK01000027 223 0
JFNK01000125 220 0
JFNK01000413 218 0
JFNK01000180 216 0
JFNK01000254 216 0
JFNK01000293 216 0
JFNK01000117 215 0
JFNK01000109 214 0
JFNK01000101 214 0
JFNK01000077 213 0
JFNK01000120 213 0
JFNK01000205 212 0
JFNK01000348 211 0
JFNK01000335 211 0
JFNK01000416 210 0
JFNK01000421 209 0
JFNK01000181 209 0
JFNK01000288 209 0
JFNK01000308 209 0
JFNK01000012 208 0
JFNK01000203 207 0
JFNK01000007 207 0
JFNK01000306 206 0
JFNK01000131 206 0
JFNK01000115 206 0
JFNK01000414 205 0
JFNK01000423 205 0
JFNK01000092 204 0
JFNK01000380 204 0
JFNK01000189 204 0
JFNK01000402 203 0
JFNK01000369 202 0
JFNK01000204 201 0
JFNK01000290 200 0
JFNK01000187 200 0
JFNK01000166 200 0
JFNK01000233 200 0
JFNK01000219 200 0
Total 1,409,853 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635735.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635735.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635735.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635735.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635735.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635735.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635735.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635735.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635735.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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