cyanobase » Prochlorococcus sp. scB245a_518I6

Prochlorococcus sp. scB245a_518I6

Summary

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Data source name GCA_000635715.1
Full name Prochlorococcus sp. scB245a_518I6 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFND01000001 299,899 0
JFND01000017 115,188 0
JFND01000111 106,971 0
JFND01000043 84,668 0
JFND01000126 62,438 0
JFND01000202 58,976 0
JFND01000214 54,748 0
JFND01000186 52,601 0
JFND01000030 42,811 0
JFND01000242 41,190 0
JFND01000069 33,346 0
JFND01000107 25,904 0
JFND01000031 25,788 0
JFND01000112 22,251 0
JFND01000042 20,730 0
JFND01000167 20,022 0
JFND01000152 12,885 0
JFND01000166 12,547 0
JFND01000244 11,181 0
JFND01000106 9,387 0
JFND01000016 8,670 0
JFND01000169 7,447 0
JFND01000113 6,902 0
JFND01000240 6,755 0
JFND01000131 6,056 0
JFND01000036 5,731 0
JFND01000110 5,426 0
JFND01000201 5,281 0
JFND01000262 4,839 0
JFND01000241 4,323 0
JFND01000225 4,275 0
JFND01000134 3,732 0
JFND01000190 3,632 0
JFND01000192 3,526 0
JFND01000109 3,462 0
JFND01000130 2,997 0
JFND01000222 2,941 0
JFND01000191 2,845 0
JFND01000223 2,823 0
JFND01000188 2,799 0
JFND01000187 2,759 0
JFND01000213 2,714 0
JFND01000184 2,616 0
JFND01000136 2,609 0
JFND01000175 2,553 0
JFND01000128 2,435 0
JFND01000203 2,359 0
JFND01000185 2,239 0
JFND01000071 2,082 0
JFND01000003 2,026 0
JFND01000212 1,991 0
JFND01000205 1,965 0
JFND01000189 1,843 0
JFND01000045 1,736 0
JFND01000146 1,732 0
JFND01000072 1,680 0
JFND01000215 1,651 0
JFND01000048 1,644 0
JFND01000263 1,639 0
JFND01000230 1,521 0
JFND01000029 1,432 0
JFND01000173 1,318 0
JFND01000040 1,308 0
JFND01000227 1,303 0
JFND01000153 1,296 0
JFND01000174 1,294 0
JFND01000032 1,252 0
JFND01000002 1,242 0
JFND01000038 1,238 0
JFND01000147 1,213 0
JFND01000198 1,165 0
JFND01000120 1,143 0
JFND01000015 1,136 0
JFND01000093 1,122 0
JFND01000046 1,110 0
JFND01000144 1,108 0
JFND01000127 1,103 0
JFND01000252 1,102 0
JFND01000293 1,080 0
JFND01000108 983 0
JFND01000138 981 0
JFND01000132 966 0
JFND01000145 933 0
JFND01000123 924 0
JFND01000103 919 0
JFND01000021 854 0
JFND01000298 852 0
JFND01000264 850 0
JFND01000177 826 0
JFND01000149 819 0
JFND01000238 815 0
JFND01000229 805 0
JFND01000050 797 0
JFND01000294 797 0
JFND01000141 794 0
JFND01000180 791 0
JFND01000194 789 0
JFND01000273 755 0
JFND01000013 731 0
JFND01000299 721 0
JFND01000133 709 0
JFND01000306 706 0
JFND01000139 704 0
JFND01000272 703 0
JFND01000208 697 0
JFND01000199 686 0
JFND01000037 680 0
JFND01000295 678 0
JFND01000081 669 0
JFND01000197 659 0
JFND01000204 649 0
JFND01000006 642 0
JFND01000073 641 0
JFND01000285 638 0
JFND01000155 636 0
JFND01000067 620 0
JFND01000193 615 0
JFND01000196 614 0
JFND01000075 614 0
JFND01000054 614 0
JFND01000142 613 0
JFND01000140 610 0
JFND01000266 607 0
JFND01000216 607 0
JFND01000059 601 0
JFND01000068 595 0
JFND01000172 594 0
JFND01000019 583 0
JFND01000060 581 0
JFND01000083 581 0
JFND01000065 576 0
JFND01000161 565 0
JFND01000026 562 0
JFND01000151 560 0
JFND01000094 557 0
JFND01000168 552 0
JFND01000023 543 0
JFND01000296 535 0
JFND01000237 529 0
JFND01000035 527 0
JFND01000305 513 0
JFND01000121 507 0
JFND01000307 501 0
JFND01000027 500 0
JFND01000274 499 0
JFND01000308 499 0
JFND01000077 493 0
JFND01000297 489 0
JFND01000265 479 0
JFND01000210 479 0
JFND01000219 478 0
JFND01000269 475 0
JFND01000209 466 0
JFND01000267 463 0
JFND01000010 460 0
JFND01000280 457 0
JFND01000095 456 0
JFND01000200 455 0
JFND01000211 450 0
JFND01000066 450 0
JFND01000247 445 0
JFND01000055 438 0
JFND01000079 433 0
JFND01000058 428 0
JFND01000228 425 0
JFND01000286 425 0
JFND01000084 419 0
JFND01000088 415 0
JFND01000157 412 0
JFND01000156 410 0
JFND01000056 407 0
JFND01000304 407 0
JFND01000122 407 0
JFND01000047 407 0
JFND01000276 407 0
JFND01000150 403 0
JFND01000170 402 0
JFND01000301 400 0
JFND01000302 395 0
JFND01000164 394 0
JFND01000137 392 0
JFND01000028 390 0
JFND01000226 386 0
JFND01000091 386 0
JFND01000092 384 0
JFND01000217 378 0
JFND01000039 369 0
JFND01000271 367 0
JFND01000171 367 0
JFND01000102 364 0
JFND01000249 364 0
JFND01000064 363 0
JFND01000007 361 0
JFND01000020 359 0
JFND01000100 359 0
JFND01000044 358 0
JFND01000117 351 0
JFND01000277 349 0
JFND01000125 348 0
JFND01000232 346 0
JFND01000289 345 0
JFND01000034 342 0
JFND01000182 341 0
JFND01000143 339 0
JFND01000257 338 0
JFND01000082 337 0
JFND01000183 336 0
JFND01000291 334 0
JFND01000270 334 0
JFND01000124 333 0
JFND01000135 329 0
JFND01000076 327 0
JFND01000033 327 0
JFND01000086 326 0
JFND01000099 326 0
JFND01000282 324 0
JFND01000279 322 0
JFND01000300 322 0
JFND01000178 318 0
JFND01000098 316 0
JFND01000258 316 0
JFND01000024 307 0
JFND01000014 305 0
JFND01000284 303 0
JFND01000245 301 0
JFND01000004 298 0
JFND01000253 298 0
JFND01000288 297 0
JFND01000085 295 0
JFND01000287 294 0
JFND01000018 292 0
JFND01000104 290 0
JFND01000221 286 0
JFND01000022 286 0
JFND01000165 283 0
JFND01000278 280 0
JFND01000096 275 0
JFND01000009 275 0
JFND01000105 275 0
JFND01000119 273 0
JFND01000025 272 0
JFND01000148 272 0
JFND01000290 270 0
JFND01000243 270 0
JFND01000041 270 0
JFND01000195 270 0
JFND01000052 270 0
JFND01000062 268 0
JFND01000275 265 0
JFND01000206 264 0
JFND01000283 264 0
JFND01000233 262 0
JFND01000181 259 0
JFND01000246 259 0
JFND01000097 254 0
JFND01000218 252 0
JFND01000224 251 0
JFND01000063 247 0
JFND01000116 245 0
JFND01000254 244 0
JFND01000070 244 0
JFND01000158 243 0
JFND01000061 243 0
JFND01000080 241 0
JFND01000231 240 0
JFND01000303 239 0
JFND01000090 238 0
JFND01000163 235 0
JFND01000261 234 0
JFND01000281 234 0
JFND01000220 234 0
JFND01000179 232 0
JFND01000260 231 0
JFND01000049 229 0
JFND01000012 228 0
JFND01000074 228 0
JFND01000154 227 0
JFND01000057 226 0
JFND01000207 225 0
JFND01000129 225 0
JFND01000115 225 0
JFND01000160 224 0
JFND01000268 224 0
JFND01000089 222 0
JFND01000235 218 0
JFND01000118 218 0
JFND01000236 216 0
JFND01000250 216 0
JFND01000248 215 0
JFND01000008 215 0
JFND01000078 214 0
JFND01000176 212 0
JFND01000162 212 0
JFND01000051 210 0
JFND01000101 209 0
JFND01000292 207 0
JFND01000239 206 0
JFND01000087 206 0
JFND01000234 205 0
JFND01000011 204 0
JFND01000159 204 0
JFND01000053 203 0
JFND01000256 203 0
JFND01000114 202 0
JFND01000259 202 0
JFND01000255 201 0
JFND01000251 201 0
JFND01000005 200 0
Total 1,368,538 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635715.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635715.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635715.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635715.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635715.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635715.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635715.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635715.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635715.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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