cyanobase » Prochlorococcus sp. scB243_498P15

Prochlorococcus sp. scB243_498P15

Summary

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Data source name GCA_000635675.1
Full name Prochlorococcus sp. scB243_498P15 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMX01000071 330,132 0
JFMX01000001 272,439 0
JFMX01000106 235,357 0
JFMX01000105 135,730 0
JFMX01000104 87,752 0
JFMX01000103 60,799 0
JFMX01000072 53,794 0
JFMX01000070 46,835 0
JFMX01000069 45,129 0
JFMX01000095 33,954 0
JFMX01000096 15,349 0
JFMX01000004 14,703 0
JFMX01000003 12,070 0
JFMX01000108 9,537 0
JFMX01000078 6,461 0
JFMX01000125 6,410 0
JFMX01000065 5,215 0
JFMX01000073 4,145 0
JFMX01000010 3,795 0
JFMX01000109 3,259 0
JFMX01000002 3,127 0
JFMX01000005 3,082 0
JFMX01000061 3,038 0
JFMX01000123 2,742 0
JFMX01000131 2,272 0
JFMX01000133 2,012 0
JFMX01000080 1,783 0
JFMX01000064 1,701 0
JFMX01000126 1,643 0
JFMX01000082 1,369 0
JFMX01000077 1,258 0
JFMX01000006 1,230 0
JFMX01000089 1,118 0
JFMX01000063 1,113 0
JFMX01000076 1,091 0
JFMX01000141 1,079 0
JFMX01000102 1,071 0
JFMX01000044 982 0
JFMX01000053 973 0
JFMX01000056 972 0
JFMX01000127 967 0
JFMX01000111 949 0
JFMX01000088 949 0
JFMX01000112 916 0
JFMX01000134 913 0
JFMX01000132 898 0
JFMX01000091 868 0
JFMX01000110 865 0
JFMX01000115 863 0
JFMX01000068 842 0
JFMX01000011 839 0
JFMX01000107 771 0
JFMX01000066 762 0
JFMX01000085 761 0
JFMX01000079 735 0
JFMX01000093 724 0
JFMX01000023 721 0
JFMX01000092 718 0
JFMX01000118 692 0
JFMX01000137 690 0
JFMX01000007 689 0
JFMX01000067 654 0
JFMX01000037 647 0
JFMX01000120 628 0
JFMX01000052 592 0
JFMX01000021 574 0
JFMX01000081 550 0
JFMX01000136 550 0
JFMX01000036 545 0
JFMX01000012 541 0
JFMX01000059 526 0
JFMX01000142 490 0
JFMX01000048 478 0
JFMX01000114 460 0
JFMX01000062 431 0
JFMX01000050 426 0
JFMX01000135 418 0
JFMX01000094 416 0
JFMX01000117 415 0
JFMX01000042 411 0
JFMX01000075 404 0
JFMX01000038 402 0
JFMX01000119 398 0
JFMX01000015 375 0
JFMX01000060 372 0
JFMX01000031 369 0
JFMX01000086 352 0
JFMX01000074 345 0
JFMX01000083 328 0
JFMX01000121 326 0
JFMX01000116 323 0
JFMX01000017 323 0
JFMX01000051 321 0
JFMX01000041 317 0
JFMX01000058 313 0
JFMX01000084 312 0
JFMX01000028 305 0
JFMX01000143 303 0
JFMX01000045 303 0
JFMX01000014 293 0
JFMX01000138 290 0
JFMX01000018 282 0
JFMX01000139 277 0
JFMX01000024 275 0
JFMX01000008 271 0
JFMX01000049 270 0
JFMX01000047 269 0
JFMX01000090 268 0
JFMX01000055 265 0
JFMX01000030 264 0
JFMX01000016 262 0
JFMX01000129 257 0
JFMX01000040 256 0
JFMX01000099 252 0
JFMX01000013 249 0
JFMX01000100 249 0
JFMX01000034 248 0
JFMX01000113 245 0
JFMX01000026 243 0
JFMX01000057 235 0
JFMX01000087 235 0
JFMX01000027 233 0
JFMX01000046 231 0
JFMX01000029 230 0
JFMX01000097 227 0
JFMX01000035 227 0
JFMX01000020 226 0
JFMX01000043 225 0
JFMX01000022 221 0
JFMX01000122 221 0
JFMX01000054 220 0
JFMX01000124 216 0
JFMX01000098 216 0
JFMX01000140 214 0
JFMX01000019 213 0
JFMX01000025 211 0
JFMX01000101 211 0
JFMX01000128 210 0
JFMX01000039 209 0
JFMX01000130 208 0
JFMX01000032 204 0
JFMX01000033 202 0
JFMX01000009 200 0
Total 1,460,426 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635675.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635675.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635675.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635675.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635675.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635675.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635675.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635675.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635675.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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