cyanobase » Prochlorococcus sp. scB243_498M14

Prochlorococcus sp. scB243_498M14

Summary

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Data source name GCA_000635655.1
Full name Prochlorococcus sp. scB243_498M14 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMU01000126 145,736 0
JFMU01000117 130,030 0
JFMU01000115 79,332 0
JFMU01000102 67,326 0
JFMU01000033 62,417 0
JFMU01000136 53,679 0
JFMU01000044 43,475 0
JFMU01000137 41,969 0
JFMU01000054 39,775 0
JFMU01000111 27,477 0
JFMU01000113 24,952 0
JFMU01000068 20,222 0
JFMU01000153 13,312 0
JFMU01000065 13,178 0
JFMU01000127 12,698 0
JFMU01000067 10,308 0
JFMU01000116 9,106 0
JFMU01000025 8,451 0
JFMU01000019 7,992 0
JFMU01000043 7,382 0
JFMU01000101 6,596 0
JFMU01000017 6,465 0
JFMU01000112 5,988 0
JFMU01000159 5,955 0
JFMU01000138 5,692 0
JFMU01000129 4,308 0
JFMU01000128 3,862 0
JFMU01000066 3,764 0
JFMU01000162 3,550 0
JFMU01000020 3,506 0
JFMU01000140 3,360 0
JFMU01000154 3,107 0
JFMU01000119 3,072 0
JFMU01000014 2,758 0
JFMU01000024 2,628 0
JFMU01000150 2,552 0
JFMU01000023 2,359 0
JFMU01000135 2,332 0
JFMU01000141 2,274 0
JFMU01000103 2,190 0
JFMU01000069 2,134 0
JFMU01000021 1,674 0
JFMU01000118 1,671 0
JFMU01000139 1,496 0
JFMU01000095 1,387 0
JFMU01000100 1,346 0
JFMU01000026 1,075 0
JFMU01000158 1,070 0
JFMU01000071 1,035 0
JFMU01000149 986 0
JFMU01000142 981 0
JFMU01000155 963 0
JFMU01000124 951 0
JFMU01000073 932 0
JFMU01000123 785 0
JFMU01000016 733 0
JFMU01000086 707 0
JFMU01000055 673 0
JFMU01000015 643 0
JFMU01000132 613 0
JFMU01000064 598 0
JFMU01000160 595 0
JFMU01000157 594 0
JFMU01000018 551 0
JFMU01000096 531 0
JFMU01000147 531 0
JFMU01000005 518 0
JFMU01000122 498 0
JFMU01000059 485 0
JFMU01000152 474 0
JFMU01000079 473 0
JFMU01000013 471 0
JFMU01000083 453 0
JFMU01000022 446 0
JFMU01000039 441 0
JFMU01000085 432 0
JFMU01000070 422 0
JFMU01000051 412 0
JFMU01000028 400 0
JFMU01000156 391 0
JFMU01000082 391 0
JFMU01000107 379 0
JFMU01000047 375 0
JFMU01000008 370 0
JFMU01000163 367 0
JFMU01000109 363 0
JFMU01000087 359 0
JFMU01000049 357 0
JFMU01000041 355 0
JFMU01000001 347 0
JFMU01000130 343 0
JFMU01000062 343 0
JFMU01000002 334 0
JFMU01000032 333 0
JFMU01000121 330 0
JFMU01000029 327 0
JFMU01000088 319 0
JFMU01000004 319 0
JFMU01000105 318 0
JFMU01000089 318 0
JFMU01000092 316 0
JFMU01000084 315 0
JFMU01000063 313 0
JFMU01000098 303 0
JFMU01000046 303 0
JFMU01000007 298 0
JFMU01000125 294 0
JFMU01000035 293 0
JFMU01000131 293 0
JFMU01000108 291 0
JFMU01000036 291 0
JFMU01000134 288 0
JFMU01000099 287 0
JFMU01000114 285 0
JFMU01000052 285 0
JFMU01000161 279 0
JFMU01000045 278 0
JFMU01000003 276 0
JFMU01000072 275 0
JFMU01000091 273 0
JFMU01000042 273 0
JFMU01000058 271 0
JFMU01000094 269 0
JFMU01000143 268 0
JFMU01000081 265 0
JFMU01000110 264 0
JFMU01000080 264 0
JFMU01000038 263 0
JFMU01000104 262 0
JFMU01000053 259 0
JFMU01000050 257 0
JFMU01000076 254 0
JFMU01000056 249 0
JFMU01000077 248 0
JFMU01000146 245 0
JFMU01000078 244 0
JFMU01000012 241 0
JFMU01000093 240 0
JFMU01000097 239 0
JFMU01000011 237 0
JFMU01000060 237 0
JFMU01000009 236 0
JFMU01000120 234 0
JFMU01000006 233 0
JFMU01000106 232 0
JFMU01000037 232 0
JFMU01000057 228 0
JFMU01000145 227 0
JFMU01000040 225 0
JFMU01000133 223 0
JFMU01000148 222 0
JFMU01000074 221 0
JFMU01000034 220 0
JFMU01000010 218 0
JFMU01000030 212 0
JFMU01000075 210 0
JFMU01000031 208 0
JFMU01000090 208 0
JFMU01000027 207 0
JFMU01000151 207 0
JFMU01000061 204 0
JFMU01000048 203 0
JFMU01000144 203 0
Total 949,651 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635655.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635655.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635655.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635655.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635655.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635655.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635655.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635655.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635655.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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