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cyanobase » Prochlorococcus sp. scB243_498F21

Prochlorococcus sp. scB243_498F21

Summary

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Data source name GCA_000635615.1
Full name Prochlorococcus sp. scB243_498F21
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMP01000392 204,695 0
JFMP01000393 133,714 0
JFMP01000243 132,168 0
JFMP01000062 93,560 0
JFMP01000391 90,667 0
JFMP01000271 67,606 0
JFMP01000254 60,462 0
JFMP01000304 49,095 0
JFMP01000390 49,047 0
JFMP01000273 46,575 0
JFMP01000001 41,553 0
JFMP01000039 36,740 0
JFMP01000297 27,730 0
JFMP01000136 26,090 0
JFMP01000270 22,284 0
JFMP01000003 19,102 0
JFMP01000332 12,548 0
JFMP01000272 10,062 0
JFMP01000002 9,170 0
JFMP01000333 7,252 0
JFMP01000389 6,116 0
JFMP01000308 5,533 0
JFMP01000303 4,910 0
JFMP01000274 4,884 0
JFMP01000135 4,357 0
JFMP01000140 4,132 0
JFMP01000013 4,032 0
JFMP01000275 3,927 0
JFMP01000362 3,673 0
JFMP01000331 3,664 0
JFMP01000004 3,467 0
JFMP01000370 3,300 0
JFMP01000232 3,095 0
JFMP01000063 2,958 0
JFMP01000064 2,927 0
JFMP01000137 2,845 0
JFMP01000047 2,827 0
JFMP01000038 2,506 0
JFMP01000011 2,455 0
JFMP01000334 2,296 0
JFMP01000242 2,272 0
JFMP01000150 2,247 0
JFMP01000327 2,150 0
JFMP01000044 2,038 0
JFMP01000311 2,017 0
JFMP01000139 1,951 0
JFMP01000010 1,934 0
JFMP01000036 1,927 0
JFMP01000041 1,755 0
JFMP01000337 1,714 0
JFMP01000012 1,708 0
JFMP01000005 1,654 0
JFMP01000156 1,624 0
JFMP01000037 1,561 0
JFMP01000046 1,479 0
JFMP01000212 1,356 0
JFMP01000367 1,352 0
JFMP01000336 1,351 0
JFMP01000256 1,321 0
JFMP01000045 1,266 0
JFMP01000066 1,258 0
JFMP01000335 1,237 0
JFMP01000008 1,227 0
JFMP01000299 1,204 0
JFMP01000145 1,200 0
JFMP01000065 1,144 0
JFMP01000325 1,113 0
JFMP01000316 1,111 0
JFMP01000368 1,090 0
JFMP01000319 1,085 0
JFMP01000358 1,063 0
JFMP01000360 1,038 0
JFMP01000294 1,031 0
JFMP01000300 1,018 0
JFMP01000144 1,001 0
JFMP01000321 995 0
JFMP01000101 985 0
JFMP01000296 954 0
JFMP01000147 947 0
JFMP01000330 934 0
JFMP01000401 933 0
JFMP01000317 931 0
JFMP01000087 918 0
JFMP01000314 909 0
JFMP01000155 895 0
JFMP01000230 883 0
JFMP01000006 873 0
JFMP01000190 842 0
JFMP01000130 827 0
JFMP01000400 815 0
JFMP01000007 790 0
JFMP01000067 781 0
JFMP01000070 779 0
JFMP01000210 770 0
JFMP01000081 756 0
JFMP01000288 737 0
JFMP01000265 735 0
JFMP01000068 734 0
JFMP01000110 714 0
JFMP01000302 712 0
JFMP01000239 712 0
JFMP01000134 711 0
JFMP01000338 708 0
JFMP01000149 708 0
JFMP01000322 707 0
JFMP01000344 692 0
JFMP01000040 692 0
JFMP01000107 671 0
JFMP01000403 665 0
JFMP01000315 661 0
JFMP01000188 658 0
JFMP01000125 655 0
JFMP01000279 655 0
JFMP01000197 655 0
JFMP01000162 644 0
JFMP01000126 618 0
JFMP01000127 618 0
JFMP01000374 614 0
JFMP01000312 602 0
JFMP01000363 601 0
JFMP01000048 601 0
JFMP01000342 590 0
JFMP01000099 586 0
JFMP01000269 566 0
JFMP01000217 558 0
JFMP01000377 558 0
JFMP01000193 558 0
JFMP01000266 555 0
JFMP01000042 554 0
JFMP01000289 549 0
JFMP01000148 539 0
JFMP01000264 536 0
JFMP01000023 534 0
JFMP01000022 534 0
JFMP01000318 533 0
JFMP01000255 529 0
JFMP01000108 526 0
JFMP01000202 521 0
JFMP01000235 518 0
JFMP01000133 516 0
JFMP01000381 512 0
JFMP01000295 509 0
JFMP01000216 508 0
JFMP01000329 507 0
JFMP01000199 505 0
JFMP01000236 505 0
JFMP01000019 503 0
JFMP01000245 496 0
JFMP01000211 491 0
JFMP01000234 486 0
JFMP01000093 485 0
JFMP01000034 482 0
JFMP01000365 481 0
JFMP01000208 481 0
JFMP01000346 478 0
JFMP01000205 476 0
JFMP01000025 474 0
JFMP01000009 467 0
JFMP01000016 464 0
JFMP01000292 464 0
JFMP01000351 463 0
JFMP01000165 462 0
JFMP01000143 459 0
JFMP01000181 457 0
JFMP01000111 455 0
JFMP01000049 451 0
JFMP01000244 451 0
JFMP01000191 450 0
JFMP01000356 448 0
JFMP01000014 447 0
JFMP01000301 447 0
JFMP01000354 446 0
JFMP01000285 443 0
JFMP01000413 441 0
JFMP01000196 438 0
JFMP01000078 436 0
JFMP01000082 436 0
JFMP01000020 434 0
JFMP01000059 430 0
JFMP01000323 430 0
JFMP01000129 428 0
JFMP01000383 427 0
JFMP01000116 427 0
JFMP01000375 427 0
JFMP01000309 423 0
JFMP01000182 421 0
JFMP01000404 420 0
JFMP01000345 420 0
JFMP01000231 419 0
JFMP01000238 419 0
JFMP01000361 418 0
JFMP01000408 416 0
JFMP01000084 414 0
JFMP01000201 412 0
JFMP01000172 412 0
JFMP01000128 409 0
JFMP01000247 407 0
JFMP01000033 406 0
JFMP01000167 406 0
JFMP01000405 404 0
JFMP01000399 402 0
JFMP01000051 396 0
JFMP01000094 395 0
JFMP01000018 394 0
JFMP01000373 388 0
JFMP01000278 387 0
JFMP01000341 383 0
JFMP01000189 381 0
JFMP01000225 380 0
JFMP01000096 378 0
JFMP01000213 376 0
JFMP01000237 372 0
JFMP01000281 370 0
JFMP01000372 370 0
JFMP01000328 369 0
JFMP01000357 369 0
JFMP01000024 365 0
JFMP01000218 361 0
JFMP01000276 358 0
JFMP01000187 355 0
JFMP01000402 353 0
JFMP01000385 353 0
JFMP01000241 352 0
JFMP01000371 350 0
JFMP01000283 349 0
JFMP01000032 349 0
JFMP01000057 349 0
JFMP01000320 347 0
JFMP01000097 347 0
JFMP01000261 346 0
JFMP01000293 346 0
JFMP01000115 346 0
JFMP01000376 344 0
JFMP01000306 338 0
JFMP01000124 338 0
JFMP01000286 337 0
JFMP01000224 335 0
JFMP01000183 334 0
JFMP01000412 333 0
JFMP01000203 333 0
JFMP01000104 333 0
JFMP01000359 332 0
JFMP01000388 331 0
JFMP01000249 330 0
JFMP01000114 330 0
JFMP01000220 327 0
JFMP01000054 325 0
JFMP01000074 324 0
JFMP01000326 323 0
JFMP01000050 322 0
JFMP01000159 321 0
JFMP01000100 321 0
JFMP01000248 319 0
JFMP01000407 319 0
JFMP01000378 319 0
JFMP01000287 318 0
JFMP01000397 317 0
JFMP01000305 317 0
JFMP01000263 316 0
JFMP01000384 316 0
JFMP01000209 316 0
JFMP01000194 315 0
JFMP01000185 315 0
JFMP01000259 315 0
JFMP01000204 314 0
JFMP01000382 313 0
JFMP01000416 313 0
JFMP01000071 312 0
JFMP01000169 310 0
JFMP01000123 309 0
JFMP01000355 307 0
JFMP01000258 307 0
JFMP01000253 307 0
JFMP01000055 304 0
JFMP01000409 303 0
JFMP01000313 302 0
JFMP01000028 302 0
JFMP01000026 301 0
JFMP01000200 300 0
JFMP01000091 298 0
JFMP01000418 297 0
JFMP01000410 296 0
JFMP01000142 296 0
JFMP01000088 295 0
JFMP01000112 295 0
JFMP01000141 294 0
JFMP01000290 293 0
JFMP01000166 293 0
JFMP01000076 293 0
JFMP01000369 292 0
JFMP01000035 292 0
JFMP01000364 291 0
JFMP01000060 290 0
JFMP01000291 289 0
JFMP01000015 289 0
JFMP01000161 288 0
JFMP01000118 288 0
JFMP01000151 286 0
JFMP01000077 285 0
JFMP01000186 279 0
JFMP01000267 279 0
JFMP01000352 279 0
JFMP01000171 277 0
JFMP01000192 277 0
JFMP01000379 276 0
JFMP01000117 273 0
JFMP01000347 271 0
JFMP01000268 269 0
JFMP01000154 268 0
JFMP01000174 267 0
JFMP01000058 267 0
JFMP01000052 266 0
JFMP01000075 265 0
JFMP01000298 265 0
JFMP01000420 264 0
JFMP01000207 263 0
JFMP01000030 261 0
JFMP01000396 261 0
JFMP01000350 260 0
JFMP01000366 257 0
JFMP01000132 256 0
JFMP01000414 256 0
JFMP01000138 255 0
JFMP01000227 254 0
JFMP01000251 253 0
JFMP01000219 252 0
JFMP01000102 252 0
JFMP01000257 252 0
JFMP01000043 252 0
JFMP01000380 252 0
JFMP01000260 250 0
JFMP01000198 250 0
JFMP01000214 248 0
JFMP01000092 247 0
JFMP01000122 246 0
JFMP01000277 246 0
JFMP01000089 245 0
JFMP01000163 243 0
JFMP01000340 242 0
JFMP01000246 242 0
JFMP01000160 241 0
JFMP01000387 241 0
JFMP01000398 239 0
JFMP01000349 238 0
JFMP01000419 238 0
JFMP01000415 237 0
JFMP01000417 237 0
JFMP01000262 236 0
JFMP01000233 236 0
JFMP01000105 235 0
JFMP01000103 235 0
JFMP01000131 235 0
JFMP01000121 234 0
JFMP01000053 234 0
JFMP01000206 234 0
JFMP01000324 233 0
JFMP01000252 233 0
JFMP01000095 232 0
JFMP01000073 232 0
JFMP01000086 231 0
JFMP01000098 230 0
JFMP01000180 229 0
JFMP01000284 229 0
JFMP01000177 229 0
JFMP01000061 228 0
JFMP01000021 228 0
JFMP01000226 227 0
JFMP01000215 227 0
JFMP01000222 227 0
JFMP01000083 227 0
JFMP01000280 226 0
JFMP01000146 226 0
JFMP01000223 226 0
JFMP01000173 225 0
JFMP01000178 224 0
JFMP01000339 224 0
JFMP01000307 224 0
JFMP01000179 223 0
JFMP01000229 223 0
JFMP01000069 223 0
JFMP01000310 223 0
JFMP01000119 222 0
JFMP01000164 221 0
JFMP01000029 221 0
JFMP01000113 220 0
JFMP01000085 220 0
JFMP01000072 219 0
JFMP01000170 219 0
JFMP01000109 218 0
JFMP01000080 218 0
JFMP01000250 218 0
JFMP01000120 217 0
JFMP01000184 217 0
JFMP01000106 217 0
JFMP01000157 216 0
JFMP01000395 215 0
JFMP01000153 215 0
JFMP01000176 213 0
JFMP01000017 212 0
JFMP01000168 212 0
JFMP01000394 212 0
JFMP01000228 210 0
JFMP01000221 210 0
JFMP01000027 209 0
JFMP01000353 207 0
JFMP01000348 207 0
JFMP01000195 206 0
JFMP01000411 205 0
JFMP01000406 204 0
JFMP01000079 203 0
JFMP01000158 202 0
JFMP01000031 202 0
JFMP01000152 202 0
JFMP01000282 201 0
JFMP01000386 201 0
JFMP01000090 201 0
JFMP01000175 201 0
JFMP01000056 201 0
JFMP01000240 201 0
JFMP01000343 200 0
Total 1,398,815 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000635615.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000635615.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000635615.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000635615.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635615.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635615.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635615.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635615.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635615.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635615.1/genes/interpro.txt (File format)

MicrobeBase