cyanobase » Prochlorococcus sp. scB243_498B23

Prochlorococcus sp. scB243_498B23

Summary

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Data source name GCA_000635595.1
Full name Prochlorococcus sp. scB243_498B23 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMN01000192 169,712 0
JFMN01000073 115,517 0
JFMN01000123 96,946 0
JFMN01000181 86,568 0
JFMN01000202 81,393 0
JFMN01000053 77,279 0
JFMN01000295 72,160 0
JFMN01000218 69,262 0
JFMN01000166 55,793 0
JFMN01000193 41,515 0
JFMN01000046 38,018 0
JFMN01000136 37,522 0
JFMN01000294 16,615 0
JFMN01000122 14,096 0
JFMN01000292 14,021 0
JFMN01000160 13,338 0
JFMN01000180 13,264 0
JFMN01000159 12,114 0
JFMN01000219 11,364 0
JFMN01000165 11,306 0
JFMN01000300 6,947 0
JFMN01000167 6,398 0
JFMN01000004 5,186 0
JFMN01000161 4,322 0
JFMN01000184 4,145 0
JFMN01000124 4,111 0
JFMN01000182 3,812 0
JFMN01000121 3,210 0
JFMN01000133 2,534 0
JFMN01000157 2,515 0
JFMN01000298 2,466 0
JFMN01000151 2,016 0
JFMN01000164 2,010 0
JFMN01000030 1,965 0
JFMN01000293 1,938 0
JFMN01000079 1,799 0
JFMN01000061 1,563 0
JFMN01000190 1,553 0
JFMN01000071 1,535 0
JFMN01000035 1,504 0
JFMN01000163 1,488 0
JFMN01000032 1,483 0
JFMN01000191 1,458 0
JFMN01000152 1,406 0
JFMN01000051 1,285 0
JFMN01000213 1,246 0
JFMN01000281 1,237 0
JFMN01000058 1,203 0
JFMN01000153 1,163 0
JFMN01000304 1,155 0
JFMN01000038 1,142 0
JFMN01000044 1,107 0
JFMN01000005 1,102 0
JFMN01000042 1,097 0
JFMN01000033 1,073 0
JFMN01000314 1,063 0
JFMN01000069 989 0
JFMN01000183 988 0
JFMN01000209 955 0
JFMN01000039 942 0
JFMN01000299 927 0
JFMN01000054 923 0
JFMN01000266 911 0
JFMN01000211 906 0
JFMN01000057 895 0
JFMN01000237 892 0
JFMN01000203 881 0
JFMN01000201 876 0
JFMN01000107 859 0
JFMN01000256 853 0
JFMN01000055 848 0
JFMN01000072 848 0
JFMN01000301 823 0
JFMN01000138 811 0
JFMN01000132 803 0
JFMN01000140 795 0
JFMN01000289 777 0
JFMN01000002 777 0
JFMN01000185 766 0
JFMN01000280 746 0
JFMN01000247 735 0
JFMN01000097 732 0
JFMN01000027 732 0
JFMN01000060 725 0
JFMN01000246 720 0
JFMN01000029 719 0
JFMN01000305 716 0
JFMN01000216 692 0
JFMN01000261 690 0
JFMN01000143 688 0
JFMN01000093 685 0
JFMN01000081 672 0
JFMN01000223 669 0
JFMN01000282 665 0
JFMN01000212 665 0
JFMN01000158 663 0
JFMN01000114 656 0
JFMN01000126 655 0
JFMN01000162 653 0
JFMN01000099 647 0
JFMN01000001 637 0
JFMN01000309 635 0
JFMN01000204 633 0
JFMN01000045 627 0
JFMN01000285 626 0
JFMN01000276 626 0
JFMN01000156 624 0
JFMN01000003 595 0
JFMN01000284 587 0
JFMN01000241 584 0
JFMN01000307 581 0
JFMN01000221 573 0
JFMN01000174 572 0
JFMN01000125 568 0
JFMN01000260 565 0
JFMN01000141 558 0
JFMN01000048 556 0
JFMN01000275 552 0
JFMN01000244 550 0
JFMN01000131 546 0
JFMN01000049 544 0
JFMN01000041 538 0
JFMN01000031 537 0
JFMN01000263 528 0
JFMN01000006 527 0
JFMN01000028 527 0
JFMN01000297 525 0
JFMN01000059 522 0
JFMN01000013 519 0
JFMN01000040 512 0
JFMN01000210 511 0
JFMN01000238 510 0
JFMN01000034 509 0
JFMN01000037 498 0
JFMN01000296 494 0
JFMN01000116 489 0
JFMN01000228 489 0
JFMN01000026 485 0
JFMN01000025 478 0
JFMN01000102 478 0
JFMN01000224 473 0
JFMN01000215 470 0
JFMN01000149 467 0
JFMN01000101 464 0
JFMN01000008 463 0
JFMN01000259 462 0
JFMN01000253 452 0
JFMN01000009 451 0
JFMN01000222 446 0
JFMN01000090 439 0
JFMN01000243 437 0
JFMN01000104 436 0
JFMN01000103 435 0
JFMN01000007 430 0
JFMN01000179 430 0
JFMN01000200 428 0
JFMN01000194 425 0
JFMN01000128 423 0
JFMN01000283 419 0
JFMN01000096 409 0
JFMN01000011 407 0
JFMN01000255 407 0
JFMN01000050 404 0
JFMN01000172 402 0
JFMN01000279 396 0
JFMN01000239 392 0
JFMN01000240 392 0
JFMN01000129 384 0
JFMN01000023 384 0
JFMN01000094 384 0
JFMN01000177 378 0
JFMN01000106 377 0
JFMN01000176 374 0
JFMN01000306 373 0
JFMN01000022 370 0
JFMN01000089 369 0
JFMN01000018 367 0
JFMN01000024 365 0
JFMN01000036 364 0
JFMN01000150 364 0
JFMN01000092 363 0
JFMN01000119 362 0
JFMN01000145 358 0
JFMN01000021 348 0
JFMN01000225 338 0
JFMN01000144 329 0
JFMN01000043 329 0
JFMN01000111 327 0
JFMN01000189 324 0
JFMN01000095 321 0
JFMN01000148 320 0
JFMN01000312 317 0
JFMN01000231 316 0
JFMN01000235 316 0
JFMN01000273 315 0
JFMN01000078 314 0
JFMN01000086 312 0
JFMN01000019 308 0
JFMN01000207 308 0
JFMN01000012 306 0
JFMN01000065 306 0
JFMN01000087 304 0
JFMN01000020 303 0
JFMN01000226 303 0
JFMN01000056 302 0
JFMN01000302 302 0
JFMN01000075 301 0
JFMN01000068 301 0
JFMN01000155 298 0
JFMN01000074 295 0
JFMN01000258 293 0
JFMN01000014 292 0
JFMN01000070 291 0
JFMN01000198 291 0
JFMN01000265 290 0
JFMN01000186 287 0
JFMN01000264 284 0
JFMN01000076 284 0
JFMN01000197 283 0
JFMN01000270 281 0
JFMN01000268 279 0
JFMN01000077 277 0
JFMN01000066 275 0
JFMN01000196 275 0
JFMN01000083 274 0
JFMN01000288 274 0
JFMN01000262 274 0
JFMN01000015 270 0
JFMN01000016 267 0
JFMN01000118 267 0
JFMN01000254 266 0
JFMN01000084 264 0
JFMN01000088 263 0
JFMN01000195 263 0
JFMN01000047 262 0
JFMN01000080 261 0
JFMN01000017 259 0
JFMN01000271 258 0
JFMN01000290 258 0
JFMN01000105 255 0
JFMN01000147 254 0
JFMN01000010 254 0
JFMN01000109 254 0
JFMN01000064 253 0
JFMN01000208 253 0
JFMN01000286 252 0
JFMN01000115 252 0
JFMN01000242 251 0
JFMN01000278 250 0
JFMN01000272 249 0
JFMN01000139 245 0
JFMN01000249 245 0
JFMN01000120 244 0
JFMN01000287 243 0
JFMN01000257 243 0
JFMN01000052 242 0
JFMN01000175 241 0
JFMN01000234 240 0
JFMN01000110 240 0
JFMN01000112 238 0
JFMN01000311 237 0
JFMN01000130 235 0
JFMN01000082 234 0
JFMN01000062 234 0
JFMN01000217 233 0
JFMN01000232 232 0
JFMN01000245 232 0
JFMN01000229 231 0
JFMN01000100 231 0
JFMN01000113 231 0
JFMN01000227 231 0
JFMN01000134 230 0
JFMN01000251 229 0
JFMN01000308 228 0
JFMN01000154 228 0
JFMN01000233 228 0
JFMN01000250 224 0
JFMN01000205 223 0
JFMN01000220 223 0
JFMN01000236 222 0
JFMN01000248 222 0
JFMN01000142 222 0
JFMN01000230 220 0
JFMN01000291 220 0
JFMN01000067 219 0
JFMN01000137 219 0
JFMN01000146 218 0
JFMN01000108 218 0
JFMN01000188 217 0
JFMN01000135 216 0
JFMN01000173 215 0
JFMN01000085 214 0
JFMN01000252 213 0
JFMN01000214 213 0
JFMN01000168 212 0
JFMN01000171 212 0
JFMN01000098 210 0
JFMN01000178 209 0
JFMN01000269 209 0
JFMN01000091 209 0
JFMN01000277 208 0
JFMN01000187 208 0
JFMN01000310 207 0
JFMN01000170 207 0
JFMN01000169 207 0
JFMN01000127 206 0
JFMN01000117 206 0
JFMN01000313 204 0
JFMN01000063 203 0
JFMN01000267 203 0
JFMN01000303 201 0
JFMN01000274 201 0
JFMN01000206 200 0
JFMN01000199 200 0
Total 1,236,607 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635595.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635595.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635595.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635595.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635595.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635595.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635595.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635595.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635595.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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