cyanobase » Prochlorococcus sp. scB243_497E17

Prochlorococcus sp. scB243_497E17

Summary

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Data source name GCA_000635575.1
Full name Prochlorococcus sp. scB243_497E17 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMH01000122 133,404 0
JFMH01000123 69,164 0
JFMH01000060 58,624 0
JFMH01000121 53,126 0
JFMH01000058 49,075 0
JFMH01000013 28,170 0
JFMH01000088 19,668 0
JFMH01000124 15,135 0
JFMH01000130 14,544 0
JFMH01000087 12,631 0
JFMH01000144 10,691 0
JFMH01000120 9,897 0
JFMH01000129 7,179 0
JFMH01000137 3,515 0
JFMH01000002 2,910 0
JFMH01000091 2,713 0
JFMH01000125 2,435 0
JFMH01000059 2,050 0
JFMH01000090 1,859 0
JFMH01000003 1,843 0
JFMH01000093 1,490 0
JFMH01000089 1,308 0
JFMH01000154 1,269 0
JFMH01000037 1,124 0
JFMH01000138 1,094 0
JFMH01000114 1,090 0
JFMH01000119 1,069 0
JFMH01000016 1,040 0
JFMH01000115 973 0
JFMH01000017 887 0
JFMH01000029 816 0
JFMH01000011 791 0
JFMH01000014 788 0
JFMH01000036 775 0
JFMH01000147 731 0
JFMH01000064 670 0
JFMH01000055 638 0
JFMH01000061 618 0
JFMH01000117 614 0
JFMH01000010 610 0
JFMH01000035 606 0
JFMH01000111 580 0
JFMH01000041 559 0
JFMH01000066 530 0
JFMH01000145 521 0
JFMH01000068 520 0
JFMH01000108 514 0
JFMH01000015 498 0
JFMH01000067 492 0
JFMH01000033 484 0
JFMH01000150 481 0
JFMH01000024 480 0
JFMH01000116 460 0
JFMH01000094 447 0
JFMH01000039 438 0
JFMH01000072 437 0
JFMH01000007 432 0
JFMH01000070 426 0
JFMH01000051 415 0
JFMH01000074 413 0
JFMH01000109 407 0
JFMH01000063 405 0
JFMH01000023 404 0
JFMH01000056 398 0
JFMH01000099 397 0
JFMH01000113 395 0
JFMH01000139 387 0
JFMH01000085 368 0
JFMH01000034 367 0
JFMH01000044 364 0
JFMH01000076 363 0
JFMH01000110 359 0
JFMH01000118 356 0
JFMH01000028 349 0
JFMH01000004 347 0
JFMH01000104 334 0
JFMH01000025 331 0
JFMH01000098 327 0
JFMH01000062 327 0
JFMH01000043 318 0
JFMH01000143 313 0
JFMH01000148 311 0
JFMH01000020 311 0
JFMH01000107 311 0
JFMH01000077 309 0
JFMH01000078 307 0
JFMH01000075 305 0
JFMH01000019 304 0
JFMH01000071 299 0
JFMH01000049 296 0
JFMH01000018 295 0
JFMH01000012 294 0
JFMH01000081 292 0
JFMH01000031 290 0
JFMH01000065 287 0
JFMH01000022 286 0
JFMH01000069 284 0
JFMH01000048 283 0
JFMH01000083 261 0
JFMH01000073 259 0
JFMH01000142 259 0
JFMH01000006 255 0
JFMH01000149 252 0
JFMH01000095 252 0
JFMH01000096 251 0
JFMH01000153 251 0
JFMH01000131 250 0
JFMH01000140 249 0
JFMH01000030 249 0
JFMH01000009 248 0
JFMH01000057 243 0
JFMH01000133 243 0
JFMH01000141 242 0
JFMH01000046 242 0
JFMH01000040 240 0
JFMH01000105 237 0
JFMH01000092 235 0
JFMH01000135 234 0
JFMH01000146 234 0
JFMH01000047 233 0
JFMH01000045 232 0
JFMH01000132 232 0
JFMH01000112 231 0
JFMH01000050 230 0
JFMH01000101 230 0
JFMH01000052 228 0
JFMH01000127 228 0
JFMH01000032 224 0
JFMH01000097 224 0
JFMH01000128 223 0
JFMH01000038 221 0
JFMH01000152 221 0
JFMH01000008 221 0
JFMH01000103 218 0
JFMH01000151 218 0
JFMH01000079 218 0
JFMH01000026 217 0
JFMH01000102 216 0
JFMH01000053 214 0
JFMH01000027 214 0
JFMH01000134 213 0
JFMH01000086 210 0
JFMH01000136 210 0
JFMH01000084 209 0
JFMH01000054 207 0
JFMH01000080 207 0
JFMH01000001 206 0
JFMH01000100 204 0
JFMH01000106 204 0
JFMH01000021 204 0
JFMH01000126 203 0
JFMH01000042 203 0
JFMH01000082 202 0
JFMH01000005 201 0
Total 552,203 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635575.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635575.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635575.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635575.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635575.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635575.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635575.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635575.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635575.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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