cyanobase » Prochlorococcus sp. scB243_496N4

Prochlorococcus sp. scB243_496N4

Summary

? | +/- | Top
Data source name GCA_000635555.1
Full name Prochlorococcus sp. scB243_496N4 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFMG01000193 180,632 0
JFMG01000313 174,179 0
JFMG01000309 92,639 0
JFMG01000104 87,663 0
JFMG01000307 67,223 0
JFMG01000118 60,040 0
JFMG01000170 52,432 0
JFMG01000012 47,318 0
JFMG01000009 46,739 0
JFMG01000007 43,721 0
JFMG01000312 35,221 0
JFMG01000010 30,203 0
JFMG01000011 27,316 0
JFMG01000105 23,409 0
JFMG01000047 23,382 0
JFMG01000192 22,616 0
JFMG01000142 18,111 0
JFMG01000311 15,492 0
JFMG01000006 15,172 0
JFMG01000291 12,275 0
JFMG01000124 11,440 0
JFMG01000131 9,898 0
JFMG01000008 9,781 0
JFMG01000119 8,888 0
JFMG01000289 8,150 0
JFMG01000288 8,034 0
JFMG01000214 7,934 0
JFMG01000310 7,782 0
JFMG01000106 7,370 0
JFMG01000046 7,182 0
JFMG01000116 6,348 0
JFMG01000308 6,312 0
JFMG01000206 5,326 0
JFMG01000058 4,666 0
JFMG01000330 4,336 0
JFMG01000115 4,189 0
JFMG01000213 4,129 0
JFMG01000304 4,104 0
JFMG01000208 4,024 0
JFMG01000290 3,958 0
JFMG01000320 3,934 0
JFMG01000109 3,823 0
JFMG01000139 3,784 0
JFMG01000362 3,765 0
JFMG01000122 3,763 0
JFMG01000245 3,588 0
JFMG01000331 3,145 0
JFMG01000332 2,968 0
JFMG01000333 2,917 0
JFMG01000123 2,855 0
JFMG01000171 2,830 0
JFMG01000302 2,798 0
JFMG01000306 2,796 0
JFMG01000137 2,767 0
JFMG01000002 2,672 0
JFMG01000246 2,609 0
JFMG01000247 2,567 0
JFMG01000005 2,551 0
JFMG01000136 2,524 0
JFMG01000001 2,449 0
JFMG01000301 2,413 0
JFMG01000194 2,326 0
JFMG01000294 2,141 0
JFMG01000299 2,120 0
JFMG01000285 2,077 0
JFMG01000297 2,057 0
JFMG01000135 2,008 0
JFMG01000262 1,964 0
JFMG01000172 1,957 0
JFMG01000140 1,916 0
JFMG01000035 1,833 0
JFMG01000048 1,790 0
JFMG01000042 1,750 0
JFMG01000254 1,747 0
JFMG01000244 1,731 0
JFMG01000222 1,615 0
JFMG01000215 1,579 0
JFMG01000191 1,508 0
JFMG01000338 1,498 0
JFMG01000125 1,464 0
JFMG01000060 1,426 0
JFMG01000126 1,396 0
JFMG01000134 1,378 0
JFMG01000369 1,347 0
JFMG01000148 1,343 0
JFMG01000287 1,326 0
JFMG01000209 1,317 0
JFMG01000336 1,316 0
JFMG01000243 1,316 0
JFMG01000003 1,299 0
JFMG01000103 1,298 0
JFMG01000261 1,290 0
JFMG01000130 1,279 0
JFMG01000133 1,240 0
JFMG01000085 1,202 0
JFMG01000120 1,172 0
JFMG01000155 1,127 0
JFMG01000128 1,126 0
JFMG01000212 1,122 0
JFMG01000216 1,112 0
JFMG01000144 1,108 0
JFMG01000370 1,083 0
JFMG01000363 1,073 0
JFMG01000077 1,033 0
JFMG01000112 1,026 0
JFMG01000100 999 0
JFMG01000207 993 0
JFMG01000374 984 0
JFMG01000107 970 0
JFMG01000239 957 0
JFMG01000073 933 0
JFMG01000056 930 0
JFMG01000143 915 0
JFMG01000132 899 0
JFMG01000242 885 0
JFMG01000094 857 0
JFMG01000217 848 0
JFMG01000251 846 0
JFMG01000063 832 0
JFMG01000274 826 0
JFMG01000293 801 0
JFMG01000298 799 0
JFMG01000053 798 0
JFMG01000069 771 0
JFMG01000086 767 0
JFMG01000220 766 0
JFMG01000227 762 0
JFMG01000296 751 0
JFMG01000108 749 0
JFMG01000237 748 0
JFMG01000065 745 0
JFMG01000335 745 0
JFMG01000176 733 0
JFMG01000146 730 0
JFMG01000233 730 0
JFMG01000240 718 0
JFMG01000081 712 0
JFMG01000141 707 0
JFMG01000049 702 0
JFMG01000345 700 0
JFMG01000346 695 0
JFMG01000061 691 0
JFMG01000334 690 0
JFMG01000292 689 0
JFMG01000145 686 0
JFMG01000318 686 0
JFMG01000180 681 0
JFMG01000013 679 0
JFMG01000113 669 0
JFMG01000339 664 0
JFMG01000127 658 0
JFMG01000344 652 0
JFMG01000068 638 0
JFMG01000159 637 0
JFMG01000092 637 0
JFMG01000014 631 0
JFMG01000174 622 0
JFMG01000258 622 0
JFMG01000284 619 0
JFMG01000167 619 0
JFMG01000083 609 0
JFMG01000337 606 0
JFMG01000186 600 0
JFMG01000238 598 0
JFMG01000340 595 0
JFMG01000205 589 0
JFMG01000376 585 0
JFMG01000097 585 0
JFMG01000066 583 0
JFMG01000190 583 0
JFMG01000091 579 0
JFMG01000029 577 0
JFMG01000300 577 0
JFMG01000366 566 0
JFMG01000090 559 0
JFMG01000147 556 0
JFMG01000149 555 0
JFMG01000295 544 0
JFMG01000062 542 0
JFMG01000045 542 0
JFMG01000343 540 0
JFMG01000270 537 0
JFMG01000372 514 0
JFMG01000341 508 0
JFMG01000250 498 0
JFMG01000225 490 0
JFMG01000080 486 0
JFMG01000156 484 0
JFMG01000158 479 0
JFMG01000161 478 0
JFMG01000279 477 0
JFMG01000268 473 0
JFMG01000004 468 0
JFMG01000026 454 0
JFMG01000138 451 0
JFMG01000038 450 0
JFMG01000064 450 0
JFMG01000044 449 0
JFMG01000031 441 0
JFMG01000041 439 0
JFMG01000198 435 0
JFMG01000252 429 0
JFMG01000236 422 0
JFMG01000348 421 0
JFMG01000168 421 0
JFMG01000169 421 0
JFMG01000226 419 0
JFMG01000347 418 0
JFMG01000117 413 0
JFMG01000259 413 0
JFMG01000114 409 0
JFMG01000323 405 0
JFMG01000221 404 0
JFMG01000342 401 0
JFMG01000218 401 0
JFMG01000230 400 0
JFMG01000235 400 0
JFMG01000223 399 0
JFMG01000095 398 0
JFMG01000255 398 0
JFMG01000096 398 0
JFMG01000373 397 0
JFMG01000184 395 0
JFMG01000282 394 0
JFMG01000071 394 0
JFMG01000355 393 0
JFMG01000089 390 0
JFMG01000264 390 0
JFMG01000263 390 0
JFMG01000352 387 0
JFMG01000052 386 0
JFMG01000256 385 0
JFMG01000022 385 0
JFMG01000249 383 0
JFMG01000166 382 0
JFMG01000177 378 0
JFMG01000234 377 0
JFMG01000286 372 0
JFMG01000018 371 0
JFMG01000353 364 0
JFMG01000150 360 0
JFMG01000070 358 0
JFMG01000241 357 0
JFMG01000067 357 0
JFMG01000253 355 0
JFMG01000371 352 0
JFMG01000199 349 0
JFMG01000267 344 0
JFMG01000317 341 0
JFMG01000377 336 0
JFMG01000043 334 0
JFMG01000319 334 0
JFMG01000303 333 0
JFMG01000375 332 0
JFMG01000072 331 0
JFMG01000265 329 0
JFMG01000079 328 0
JFMG01000325 327 0
JFMG01000277 327 0
JFMG01000151 326 0
JFMG01000365 325 0
JFMG01000196 321 0
JFMG01000260 319 0
JFMG01000204 318 0
JFMG01000074 317 0
JFMG01000050 316 0
JFMG01000219 314 0
JFMG01000054 313 0
JFMG01000057 309 0
JFMG01000099 306 0
JFMG01000078 305 0
JFMG01000203 301 0
JFMG01000275 301 0
JFMG01000224 299 0
JFMG01000039 299 0
JFMG01000257 297 0
JFMG01000358 297 0
JFMG01000020 296 0
JFMG01000076 295 0
JFMG01000349 294 0
JFMG01000276 293 0
JFMG01000162 292 0
JFMG01000278 290 0
JFMG01000111 288 0
JFMG01000210 287 0
JFMG01000021 285 0
JFMG01000229 285 0
JFMG01000051 284 0
JFMG01000185 278 0
JFMG01000305 276 0
JFMG01000272 274 0
JFMG01000173 274 0
JFMG01000271 272 0
JFMG01000273 271 0
JFMG01000030 270 0
JFMG01000182 269 0
JFMG01000032 269 0
JFMG01000178 268 0
JFMG01000283 268 0
JFMG01000059 267 0
JFMG01000269 266 0
JFMG01000321 265 0
JFMG01000350 263 0
JFMG01000088 263 0
JFMG01000179 261 0
JFMG01000160 261 0
JFMG01000023 260 0
JFMG01000211 260 0
JFMG01000027 260 0
JFMG01000231 260 0
JFMG01000033 254 0
JFMG01000154 251 0
JFMG01000364 251 0
JFMG01000351 249 0
JFMG01000201 249 0
JFMG01000315 247 0
JFMG01000356 246 0
JFMG01000359 245 0
JFMG01000314 243 0
JFMG01000361 243 0
JFMG01000181 243 0
JFMG01000110 243 0
JFMG01000195 242 0
JFMG01000183 240 0
JFMG01000098 240 0
JFMG01000188 238 0
JFMG01000354 237 0
JFMG01000164 237 0
JFMG01000087 236 0
JFMG01000034 236 0
JFMG01000025 236 0
JFMG01000281 236 0
JFMG01000084 235 0
JFMG01000015 235 0
JFMG01000197 234 0
JFMG01000327 232 0
JFMG01000101 230 0
JFMG01000165 229 0
JFMG01000324 228 0
JFMG01000102 227 0
JFMG01000024 227 0
JFMG01000368 225 0
JFMG01000129 224 0
JFMG01000357 224 0
JFMG01000328 223 0
JFMG01000082 222 0
JFMG01000329 221 0
JFMG01000266 221 0
JFMG01000153 221 0
JFMG01000228 220 0
JFMG01000202 220 0
JFMG01000175 219 0
JFMG01000152 217 0
JFMG01000016 216 0
JFMG01000040 215 0
JFMG01000322 215 0
JFMG01000232 214 0
JFMG01000055 213 0
JFMG01000280 212 0
JFMG01000187 212 0
JFMG01000121 211 0
JFMG01000157 211 0
JFMG01000017 209 0
JFMG01000019 208 0
JFMG01000248 207 0
JFMG01000316 206 0
JFMG01000367 206 0
JFMG01000036 206 0
JFMG01000093 206 0
JFMG01000360 204 0
JFMG01000163 203 0
JFMG01000200 203 0
JFMG01000189 203 0
JFMG01000028 202 0
JFMG01000326 202 0
JFMG01000037 202 0
JFMG01000075 176 0
Total 1,453,964 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000635555.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635555.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635555.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635555.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635555.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635555.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635555.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635555.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635555.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer