cyanobase » Prochlorococcus sp. scB243_496M6

Prochlorococcus sp. scB243_496M6

Summary

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Data source name GCA_000635535.1
Full name Prochlorococcus sp. scB243_496M6 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMF01000082 59,652 0
JFMF01000461 57,781 0
JFMF01000412 51,912 0
JFMF01000195 51,801 0
JFMF01000008 50,331 0
JFMF01000140 47,770 0
JFMF01000166 43,710 0
JFMF01000423 35,547 0
JFMF01000378 26,699 0
JFMF01000377 25,801 0
JFMF01000041 24,525 0
JFMF01000244 24,519 0
JFMF01000039 22,722 0
JFMF01000162 21,333 0
JFMF01000003 16,500 0
JFMF01000143 14,270 0
JFMF01000189 13,240 0
JFMF01000421 12,396 0
JFMF01000038 12,255 0
JFMF01000451 12,212 0
JFMF01000374 10,831 0
JFMF01000464 9,795 0
JFMF01000460 9,579 0
JFMF01000001 7,499 0
JFMF01000136 7,164 0
JFMF01000037 6,640 0
JFMF01000465 6,595 0
JFMF01000101 6,343 0
JFMF01000080 5,213 0
JFMF01000083 4,955 0
JFMF01000198 4,627 0
JFMF01000137 4,610 0
JFMF01000043 4,532 0
JFMF01000004 4,292 0
JFMF01000072 4,105 0
JFMF01000370 4,057 0
JFMF01000165 3,835 0
JFMF01000149 3,524 0
JFMF01000100 3,251 0
JFMF01000092 3,122 0
JFMF01000478 3,069 0
JFMF01000144 3,065 0
JFMF01000040 3,024 0
JFMF01000490 2,916 0
JFMF01000009 2,890 0
JFMF01000372 2,761 0
JFMF01000196 2,741 0
JFMF01000241 2,736 0
JFMF01000164 2,730 0
JFMF01000075 2,726 0
JFMF01000141 2,519 0
JFMF01000379 2,364 0
JFMF01000240 2,278 0
JFMF01000042 2,268 0
JFMF01000007 2,205 0
JFMF01000087 2,159 0
JFMF01000199 1,956 0
JFMF01000064 1,916 0
JFMF01000381 1,871 0
JFMF01000306 1,832 0
JFMF01000044 1,829 0
JFMF01000380 1,783 0
JFMF01000230 1,764 0
JFMF01000304 1,719 0
JFMF01000074 1,686 0
JFMF01000002 1,623 0
JFMF01000132 1,618 0
JFMF01000342 1,564 0
JFMF01000081 1,516 0
JFMF01000065 1,492 0
JFMF01000142 1,405 0
JFMF01000210 1,398 0
JFMF01000294 1,386 0
JFMF01000117 1,373 0
JFMF01000373 1,346 0
JFMF01000410 1,345 0
JFMF01000086 1,258 0
JFMF01000154 1,183 0
JFMF01000188 1,164 0
JFMF01000115 1,146 0
JFMF01000197 1,110 0
JFMF01000089 1,062 0
JFMF01000243 1,054 0
JFMF01000305 1,049 0
JFMF01000249 1,037 0
JFMF01000413 1,001 0
JFMF01000215 997 0
JFMF01000173 981 0
JFMF01000139 977 0
JFMF01000066 972 0
JFMF01000157 957 0
JFMF01000239 952 0
JFMF01000073 948 0
JFMF01000234 929 0
JFMF01000151 926 0
JFMF01000096 923 0
JFMF01000011 912 0
JFMF01000334 911 0
JFMF01000407 898 0
JFMF01000245 889 0
JFMF01000155 887 0
JFMF01000359 884 0
JFMF01000116 875 0
JFMF01000107 873 0
JFMF01000045 854 0
JFMF01000085 830 0
JFMF01000383 820 0
JFMF01000450 805 0
JFMF01000422 805 0
JFMF01000108 789 0
JFMF01000098 781 0
JFMF01000382 777 0
JFMF01000246 770 0
JFMF01000012 769 0
JFMF01000063 769 0
JFMF01000046 766 0
JFMF01000369 762 0
JFMF01000227 749 0
JFMF01000332 745 0
JFMF01000156 737 0
JFMF01000301 726 0
JFMF01000104 724 0
JFMF01000434 719 0
JFMF01000128 716 0
JFMF01000176 707 0
JFMF01000297 701 0
JFMF01000077 701 0
JFMF01000420 700 0
JFMF01000295 695 0
JFMF01000335 694 0
JFMF01000228 684 0
JFMF01000148 673 0
JFMF01000459 649 0
JFMF01000265 637 0
JFMF01000047 631 0
JFMF01000433 627 0
JFMF01000138 614 0
JFMF01000093 601 0
JFMF01000480 596 0
JFMF01000099 596 0
JFMF01000058 588 0
JFMF01000415 587 0
JFMF01000091 582 0
JFMF01000193 574 0
JFMF01000057 572 0
JFMF01000409 565 0
JFMF01000161 561 0
JFMF01000070 550 0
JFMF01000172 548 0
JFMF01000168 541 0
JFMF01000357 539 0
JFMF01000417 538 0
JFMF01000285 536 0
JFMF01000209 532 0
JFMF01000071 532 0
JFMF01000169 531 0
JFMF01000088 525 0
JFMF01000220 519 0
JFMF01000056 519 0
JFMF01000213 519 0
JFMF01000302 519 0
JFMF01000181 518 0
JFMF01000224 516 0
JFMF01000251 516 0
JFMF01000296 513 0
JFMF01000261 512 0
JFMF01000270 511 0
JFMF01000167 504 0
JFMF01000387 502 0
JFMF01000429 501 0
JFMF01000257 495 0
JFMF01000319 488 0
JFMF01000090 486 0
JFMF01000255 482 0
JFMF01000114 478 0
JFMF01000017 473 0
JFMF01000252 467 0
JFMF01000355 461 0
JFMF01000368 459 0
JFMF01000067 457 0
JFMF01000094 456 0
JFMF01000362 451 0
JFMF01000187 451 0
JFMF01000184 451 0
JFMF01000068 449 0
JFMF01000219 447 0
JFMF01000175 442 0
JFMF01000256 441 0
JFMF01000034 440 0
JFMF01000435 438 0
JFMF01000223 438 0
JFMF01000344 433 0
JFMF01000347 427 0
JFMF01000229 427 0
JFMF01000311 423 0
JFMF01000079 423 0
JFMF01000158 421 0
JFMF01000231 416 0
JFMF01000262 414 0
JFMF01000059 413 0
JFMF01000178 413 0
JFMF01000133 411 0
JFMF01000358 411 0
JFMF01000254 409 0
JFMF01000488 406 0
JFMF01000385 406 0
JFMF01000253 404 0
JFMF01000069 402 0
JFMF01000135 400 0
JFMF01000401 399 0
JFMF01000200 399 0
JFMF01000472 396 0
JFMF01000312 396 0
JFMF01000371 388 0
JFMF01000315 387 0
JFMF01000290 386 0
JFMF01000232 385 0
JFMF01000395 384 0
JFMF01000179 384 0
JFMF01000010 383 0
JFMF01000308 383 0
JFMF01000060 379 0
JFMF01000032 379 0
JFMF01000452 375 0
JFMF01000237 375 0
JFMF01000274 372 0
JFMF01000298 370 0
JFMF01000054 370 0
JFMF01000006 368 0
JFMF01000408 366 0
JFMF01000174 366 0
JFMF01000036 365 0
JFMF01000320 364 0
JFMF01000134 364 0
JFMF01000260 362 0
JFMF01000214 361 0
JFMF01000432 360 0
JFMF01000482 359 0
JFMF01000113 359 0
JFMF01000218 358 0
JFMF01000448 357 0
JFMF01000097 357 0
JFMF01000050 356 0
JFMF01000048 355 0
JFMF01000376 355 0
JFMF01000025 354 0
JFMF01000457 353 0
JFMF01000479 351 0
JFMF01000111 350 0
JFMF01000356 349 0
JFMF01000439 348 0
JFMF01000317 345 0
JFMF01000125 343 0
JFMF01000183 342 0
JFMF01000024 338 0
JFMF01000103 334 0
JFMF01000367 334 0
JFMF01000014 333 0
JFMF01000345 330 0
JFMF01000221 330 0
JFMF01000238 329 0
JFMF01000171 328 0
JFMF01000333 327 0
JFMF01000084 327 0
JFMF01000247 326 0
JFMF01000363 323 0
JFMF01000124 323 0
JFMF01000402 322 0
JFMF01000394 321 0
JFMF01000340 321 0
JFMF01000258 315 0
JFMF01000248 314 0
JFMF01000281 314 0
JFMF01000180 314 0
JFMF01000299 313 0
JFMF01000225 311 0
JFMF01000453 311 0
JFMF01000443 310 0
JFMF01000280 310 0
JFMF01000458 309 0
JFMF01000112 309 0
JFMF01000264 307 0
JFMF01000485 307 0
JFMF01000130 307 0
JFMF01000360 306 0
JFMF01000018 303 0
JFMF01000436 303 0
JFMF01000287 302 0
JFMF01000208 302 0
JFMF01000411 302 0
JFMF01000145 301 0
JFMF01000284 301 0
JFMF01000029 300 0
JFMF01000313 299 0
JFMF01000455 299 0
JFMF01000106 298 0
JFMF01000019 297 0
JFMF01000437 296 0
JFMF01000202 294 0
JFMF01000348 294 0
JFMF01000266 294 0
JFMF01000341 293 0
JFMF01000427 293 0
JFMF01000454 292 0
JFMF01000338 290 0
JFMF01000456 289 0
JFMF01000431 289 0
JFMF01000268 288 0
JFMF01000444 286 0
JFMF01000393 284 0
JFMF01000292 284 0
JFMF01000226 283 0
JFMF01000440 282 0
JFMF01000316 282 0
JFMF01000331 281 0
JFMF01000391 281 0
JFMF01000419 278 0
JFMF01000205 278 0
JFMF01000110 277 0
JFMF01000414 276 0
JFMF01000022 276 0
JFMF01000326 276 0
JFMF01000095 276 0
JFMF01000293 276 0
JFMF01000489 274 0
JFMF01000282 274 0
JFMF01000406 274 0
JFMF01000286 273 0
JFMF01000438 272 0
JFMF01000235 272 0
JFMF01000109 271 0
JFMF01000061 271 0
JFMF01000352 271 0
JFMF01000397 270 0
JFMF01000049 269 0
JFMF01000283 268 0
JFMF01000388 267 0
JFMF01000147 267 0
JFMF01000146 265 0
JFMF01000211 265 0
JFMF01000399 264 0
JFMF01000337 264 0
JFMF01000076 263 0
JFMF01000026 262 0
JFMF01000052 262 0
JFMF01000361 261 0
JFMF01000463 261 0
JFMF01000447 261 0
JFMF01000487 261 0
JFMF01000186 260 0
JFMF01000250 259 0
JFMF01000350 258 0
JFMF01000349 257 0
JFMF01000182 257 0
JFMF01000303 257 0
JFMF01000309 257 0
JFMF01000386 257 0
JFMF01000035 256 0
JFMF01000416 255 0
JFMF01000289 255 0
JFMF01000031 253 0
JFMF01000396 253 0
JFMF01000403 253 0
JFMF01000398 252 0
JFMF01000471 251 0
JFMF01000310 251 0
JFMF01000330 250 0
JFMF01000470 250 0
JFMF01000053 249 0
JFMF01000194 249 0
JFMF01000030 248 0
JFMF01000467 247 0
JFMF01000426 247 0
JFMF01000336 246 0
JFMF01000153 244 0
JFMF01000105 244 0
JFMF01000390 244 0
JFMF01000118 244 0
JFMF01000481 243 0
JFMF01000021 243 0
JFMF01000015 243 0
JFMF01000078 243 0
JFMF01000122 242 0
JFMF01000207 242 0
JFMF01000185 242 0
JFMF01000203 242 0
JFMF01000404 241 0
JFMF01000267 240 0
JFMF01000263 240 0
JFMF01000206 239 0
JFMF01000469 238 0
JFMF01000462 238 0
JFMF01000364 238 0
JFMF01000392 236 0
JFMF01000217 236 0
JFMF01000442 235 0
JFMF01000160 235 0
JFMF01000222 233 0
JFMF01000272 233 0
JFMF01000271 233 0
JFMF01000449 233 0
JFMF01000307 233 0
JFMF01000389 233 0
JFMF01000351 232 0
JFMF01000484 232 0
JFMF01000123 231 0
JFMF01000300 229 0
JFMF01000020 229 0
JFMF01000321 228 0
JFMF01000126 228 0
JFMF01000177 228 0
JFMF01000405 227 0
JFMF01000120 227 0
JFMF01000441 226 0
JFMF01000375 226 0
JFMF01000163 226 0
JFMF01000428 224 0
JFMF01000127 224 0
JFMF01000473 223 0
JFMF01000055 223 0
JFMF01000318 223 0
JFMF01000131 223 0
JFMF01000242 222 0
JFMF01000204 222 0
JFMF01000353 221 0
JFMF01000233 221 0
JFMF01000483 220 0
JFMF01000033 219 0
JFMF01000273 219 0
JFMF01000102 218 0
JFMF01000354 217 0
JFMF01000236 216 0
JFMF01000468 216 0
JFMF01000430 216 0
JFMF01000424 216 0
JFMF01000327 215 0
JFMF01000013 215 0
JFMF01000277 215 0
JFMF01000325 215 0
JFMF01000170 214 0
JFMF01000343 214 0
JFMF01000474 213 0
JFMF01000027 213 0
JFMF01000121 213 0
JFMF01000400 212 0
JFMF01000291 212 0
JFMF01000191 211 0
JFMF01000477 211 0
JFMF01000159 210 0
JFMF01000275 210 0
JFMF01000339 210 0
JFMF01000190 209 0
JFMF01000259 208 0
JFMF01000278 208 0
JFMF01000129 208 0
JFMF01000216 208 0
JFMF01000346 208 0
JFMF01000446 207 0
JFMF01000425 207 0
JFMF01000475 207 0
JFMF01000005 206 0
JFMF01000119 206 0
JFMF01000418 206 0
JFMF01000062 206 0
JFMF01000023 206 0
JFMF01000486 205 0
JFMF01000445 205 0
JFMF01000152 205 0
JFMF01000269 205 0
JFMF01000028 205 0
JFMF01000279 204 0
JFMF01000476 204 0
JFMF01000314 203 0
JFMF01000329 203 0
JFMF01000366 203 0
JFMF01000466 203 0
JFMF01000328 202 0
JFMF01000384 201 0
JFMF01000201 201 0
JFMF01000288 201 0
JFMF01000051 201 0
JFMF01000192 201 0
JFMF01000150 200 0
JFMF01000276 200 0
JFMF01000324 200 0
JFMF01000322 200 0
JFMF01000323 200 0
JFMF01000212 200 0
JFMF01000016 200 0
JFMF01000365 138 0
Total 977,410 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635535.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635535.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635535.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635535.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635535.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635535.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635535.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635535.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635535.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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