cyanobase » Prochlorococcus sp. scB243_495N3

Prochlorococcus sp. scB243_495N3

Summary

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Data source name GCA_000635515.1
Full name Prochlorococcus sp. scB243_495N3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLZ01000309 73,924 0
JFLZ01000286 62,163 0
JFLZ01000275 42,064 0
JFLZ01000105 41,934 0
JFLZ01000104 35,486 0
JFLZ01000196 33,745 0
JFLZ01000172 32,217 0
JFLZ01000321 26,936 0
JFLZ01000043 23,816 0
JFLZ01000044 22,193 0
JFLZ01000274 20,396 0
JFLZ01000208 19,786 0
JFLZ01000039 19,183 0
JFLZ01000177 18,145 0
JFLZ01000076 17,873 0
JFLZ01000326 15,823 0
JFLZ01000228 15,318 0
JFLZ01000037 14,812 0
JFLZ01000088 14,441 0
JFLZ01000081 14,127 0
JFLZ01000224 12,988 0
JFLZ01000179 12,393 0
JFLZ01000175 12,094 0
JFLZ01000106 11,478 0
JFLZ01000001 10,688 0
JFLZ01000173 9,036 0
JFLZ01000010 7,899 0
JFLZ01000009 7,767 0
JFLZ01000040 6,728 0
JFLZ01000087 6,648 0
JFLZ01000005 5,920 0
JFLZ01000045 5,465 0
JFLZ01000180 5,191 0
JFLZ01000011 5,121 0
JFLZ01000176 4,781 0
JFLZ01000211 4,778 0
JFLZ01000002 4,462 0
JFLZ01000095 4,220 0
JFLZ01000322 3,973 0
JFLZ01000103 3,870 0
JFLZ01000307 3,801 0
JFLZ01000276 3,716 0
JFLZ01000004 3,355 0
JFLZ01000226 3,249 0
JFLZ01000073 3,233 0
JFLZ01000288 3,182 0
JFLZ01000229 3,036 0
JFLZ01000231 3,012 0
JFLZ01000031 2,875 0
JFLZ01000154 2,615 0
JFLZ01000034 2,275 0
JFLZ01000318 2,228 0
JFLZ01000085 2,188 0
JFLZ01000153 2,061 0
JFLZ01000308 2,046 0
JFLZ01000079 1,822 0
JFLZ01000192 1,775 0
JFLZ01000096 1,684 0
JFLZ01000337 1,669 0
JFLZ01000181 1,617 0
JFLZ01000083 1,554 0
JFLZ01000055 1,533 0
JFLZ01000351 1,517 0
JFLZ01000033 1,501 0
JFLZ01000316 1,482 0
JFLZ01000097 1,330 0
JFLZ01000203 1,321 0
JFLZ01000212 1,254 0
JFLZ01000030 1,233 0
JFLZ01000278 1,183 0
JFLZ01000036 1,174 0
JFLZ01000190 1,156 0
JFLZ01000003 1,140 0
JFLZ01000297 1,124 0
JFLZ01000315 1,110 0
JFLZ01000342 1,109 0
JFLZ01000090 1,089 0
JFLZ01000098 1,080 0
JFLZ01000038 1,068 0
JFLZ01000344 1,063 0
JFLZ01000243 1,053 0
JFLZ01000149 1,040 0
JFLZ01000305 1,037 0
JFLZ01000317 1,024 0
JFLZ01000225 1,017 0
JFLZ01000323 953 0
JFLZ01000277 949 0
JFLZ01000234 920 0
JFLZ01000311 906 0
JFLZ01000185 904 0
JFLZ01000201 896 0
JFLZ01000189 892 0
JFLZ01000361 890 0
JFLZ01000188 890 0
JFLZ01000187 884 0
JFLZ01000341 879 0
JFLZ01000230 851 0
JFLZ01000339 848 0
JFLZ01000147 836 0
JFLZ01000368 811 0
JFLZ01000186 809 0
JFLZ01000306 795 0
JFLZ01000340 764 0
JFLZ01000215 761 0
JFLZ01000289 759 0
JFLZ01000074 753 0
JFLZ01000099 753 0
JFLZ01000080 725 0
JFLZ01000241 724 0
JFLZ01000240 711 0
JFLZ01000086 708 0
JFLZ01000338 701 0
JFLZ01000221 698 0
JFLZ01000125 697 0
JFLZ01000108 682 0
JFLZ01000287 680 0
JFLZ01000273 679 0
JFLZ01000007 659 0
JFLZ01000183 657 0
JFLZ01000025 657 0
JFLZ01000032 654 0
JFLZ01000116 650 0
JFLZ01000159 650 0
JFLZ01000367 640 0
JFLZ01000210 621 0
JFLZ01000184 615 0
JFLZ01000157 611 0
JFLZ01000237 604 0
JFLZ01000158 602 0
JFLZ01000170 594 0
JFLZ01000194 590 0
JFLZ01000021 584 0
JFLZ01000130 579 0
JFLZ01000362 573 0
JFLZ01000151 549 0
JFLZ01000127 547 0
JFLZ01000152 543 0
JFLZ01000345 540 0
JFLZ01000268 533 0
JFLZ01000060 531 0
JFLZ01000165 530 0
JFLZ01000069 526 0
JFLZ01000109 523 0
JFLZ01000143 518 0
JFLZ01000242 517 0
JFLZ01000352 509 0
JFLZ01000006 505 0
JFLZ01000193 503 0
JFLZ01000266 493 0
JFLZ01000200 488 0
JFLZ01000280 488 0
JFLZ01000071 485 0
JFLZ01000091 484 0
JFLZ01000058 484 0
JFLZ01000360 483 0
JFLZ01000253 482 0
JFLZ01000314 479 0
JFLZ01000107 478 0
JFLZ01000264 474 0
JFLZ01000313 469 0
JFLZ01000204 466 0
JFLZ01000052 465 0
JFLZ01000093 456 0
JFLZ01000312 450 0
JFLZ01000343 443 0
JFLZ01000140 435 0
JFLZ01000029 434 0
JFLZ01000094 433 0
JFLZ01000328 430 0
JFLZ01000072 426 0
JFLZ01000285 424 0
JFLZ01000279 413 0
JFLZ01000120 410 0
JFLZ01000209 398 0
JFLZ01000364 395 0
JFLZ01000252 395 0
JFLZ01000142 393 0
JFLZ01000019 393 0
JFLZ01000283 388 0
JFLZ01000111 388 0
JFLZ01000247 387 0
JFLZ01000227 382 0
JFLZ01000041 378 0
JFLZ01000295 378 0
JFLZ01000325 375 0
JFLZ01000294 374 0
JFLZ01000258 374 0
JFLZ01000217 374 0
JFLZ01000218 373 0
JFLZ01000260 372 0
JFLZ01000222 371 0
JFLZ01000150 370 0
JFLZ01000263 365 0
JFLZ01000020 362 0
JFLZ01000112 362 0
JFLZ01000236 361 0
JFLZ01000291 360 0
JFLZ01000244 358 0
JFLZ01000171 358 0
JFLZ01000163 357 0
JFLZ01000248 356 0
JFLZ01000047 354 0
JFLZ01000250 354 0
JFLZ01000346 351 0
JFLZ01000064 348 0
JFLZ01000358 347 0
JFLZ01000303 344 0
JFLZ01000292 342 0
JFLZ01000293 341 0
JFLZ01000122 340 0
JFLZ01000233 340 0
JFLZ01000365 338 0
JFLZ01000246 336 0
JFLZ01000300 334 0
JFLZ01000082 334 0
JFLZ01000008 332 0
JFLZ01000062 330 0
JFLZ01000042 330 0
JFLZ01000267 328 0
JFLZ01000167 326 0
JFLZ01000050 325 0
JFLZ01000057 323 0
JFLZ01000251 322 0
JFLZ01000207 320 0
JFLZ01000272 317 0
JFLZ01000347 316 0
JFLZ01000061 313 0
JFLZ01000353 313 0
JFLZ01000195 313 0
JFLZ01000348 312 0
JFLZ01000013 311 0
JFLZ01000101 311 0
JFLZ01000290 309 0
JFLZ01000049 309 0
JFLZ01000121 308 0
JFLZ01000214 307 0
JFLZ01000015 307 0
JFLZ01000327 307 0
JFLZ01000254 306 0
JFLZ01000349 305 0
JFLZ01000129 305 0
JFLZ01000084 304 0
JFLZ01000261 298 0
JFLZ01000027 297 0
JFLZ01000068 297 0
JFLZ01000191 296 0
JFLZ01000356 296 0
JFLZ01000134 296 0
JFLZ01000202 294 0
JFLZ01000269 290 0
JFLZ01000238 290 0
JFLZ01000135 290 0
JFLZ01000299 289 0
JFLZ01000018 287 0
JFLZ01000320 286 0
JFLZ01000128 286 0
JFLZ01000335 284 0
JFLZ01000319 284 0
JFLZ01000133 284 0
JFLZ01000024 281 0
JFLZ01000110 279 0
JFLZ01000355 278 0
JFLZ01000324 277 0
JFLZ01000235 276 0
JFLZ01000334 276 0
JFLZ01000302 276 0
JFLZ01000138 275 0
JFLZ01000304 273 0
JFLZ01000102 271 0
JFLZ01000310 270 0
JFLZ01000281 270 0
JFLZ01000354 269 0
JFLZ01000216 268 0
JFLZ01000078 266 0
JFLZ01000271 266 0
JFLZ01000118 266 0
JFLZ01000053 265 0
JFLZ01000160 264 0
JFLZ01000164 264 0
JFLZ01000256 263 0
JFLZ01000156 263 0
JFLZ01000051 262 0
JFLZ01000219 260 0
JFLZ01000249 258 0
JFLZ01000144 257 0
JFLZ01000223 255 0
JFLZ01000028 255 0
JFLZ01000124 254 0
JFLZ01000257 253 0
JFLZ01000077 253 0
JFLZ01000100 252 0
JFLZ01000166 249 0
JFLZ01000282 249 0
JFLZ01000114 248 0
JFLZ01000363 247 0
JFLZ01000259 247 0
JFLZ01000332 247 0
JFLZ01000046 246 0
JFLZ01000026 245 0
JFLZ01000197 242 0
JFLZ01000022 242 0
JFLZ01000132 241 0
JFLZ01000213 240 0
JFLZ01000155 239 0
JFLZ01000092 239 0
JFLZ01000262 239 0
JFLZ01000148 238 0
JFLZ01000115 237 0
JFLZ01000131 236 0
JFLZ01000330 235 0
JFLZ01000182 234 0
JFLZ01000054 233 0
JFLZ01000255 233 0
JFLZ01000139 232 0
JFLZ01000357 232 0
JFLZ01000169 232 0
JFLZ01000162 231 0
JFLZ01000331 231 0
JFLZ01000136 230 0
JFLZ01000174 228 0
JFLZ01000012 228 0
JFLZ01000333 228 0
JFLZ01000298 227 0
JFLZ01000017 225 0
JFLZ01000137 223 0
JFLZ01000232 223 0
JFLZ01000205 223 0
JFLZ01000245 222 0
JFLZ01000089 221 0
JFLZ01000359 221 0
JFLZ01000126 220 0
JFLZ01000141 219 0
JFLZ01000239 219 0
JFLZ01000113 219 0
JFLZ01000366 218 0
JFLZ01000119 218 0
JFLZ01000056 218 0
JFLZ01000066 217 0
JFLZ01000059 217 0
JFLZ01000070 217 0
JFLZ01000117 216 0
JFLZ01000016 215 0
JFLZ01000284 215 0
JFLZ01000035 215 0
JFLZ01000067 213 0
JFLZ01000123 212 0
JFLZ01000161 211 0
JFLZ01000206 211 0
JFLZ01000048 210 0
JFLZ01000178 210 0
JFLZ01000145 210 0
JFLZ01000296 209 0
JFLZ01000265 208 0
JFLZ01000199 208 0
JFLZ01000336 206 0
JFLZ01000023 206 0
JFLZ01000146 206 0
JFLZ01000270 205 0
JFLZ01000301 205 0
JFLZ01000075 205 0
JFLZ01000329 205 0
JFLZ01000014 204 0
JFLZ01000065 202 0
JFLZ01000063 202 0
JFLZ01000168 201 0
JFLZ01000198 201 0
JFLZ01000350 201 0
JFLZ01000220 201 0
Total 901,033 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635515.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635515.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635515.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635515.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635515.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635515.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635515.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635515.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635515.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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