cyanobase » Prochlorococcus sp. scB243_495K23

Prochlorococcus sp. scB243_495K23

Summary

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Data source name GCA_000635495.1
Full name Prochlorococcus sp. scB243_495K23 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLW01000001 333,926 0
JFLW01000003 299,854 0
JFLW01000086 167,995 0
JFLW01000041 159,500 0
JFLW01000089 151,468 0
JFLW01000087 136,278 0
JFLW01000002 114,720 0
JFLW01000084 92,286 0
JFLW01000040 18,221 0
JFLW01000121 16,422 0
JFLW01000025 12,345 0
JFLW01000085 11,011 0
JFLW01000102 7,356 0
JFLW01000029 7,321 0
JFLW01000088 5,918 0
JFLW01000015 4,485 0
JFLW01000063 3,483 0
JFLW01000058 3,237 0
JFLW01000044 3,080 0
JFLW01000100 2,160 0
JFLW01000079 2,131 0
JFLW01000042 2,129 0
JFLW01000056 1,920 0
JFLW01000101 1,897 0
JFLW01000031 1,868 0
JFLW01000123 1,852 0
JFLW01000043 1,535 0
JFLW01000057 1,519 0
JFLW01000021 1,408 0
JFLW01000033 1,370 0
JFLW01000105 1,368 0
JFLW01000116 1,365 0
JFLW01000092 1,314 0
JFLW01000059 1,274 0
JFLW01000082 1,255 0
JFLW01000027 1,250 0
JFLW01000047 1,205 0
JFLW01000106 1,198 0
JFLW01000103 1,132 0
JFLW01000076 1,122 0
JFLW01000045 1,018 0
JFLW01000107 1,006 0
JFLW01000104 1,006 0
JFLW01000026 995 0
JFLW01000124 994 0
JFLW01000022 988 0
JFLW01000013 972 0
JFLW01000049 939 0
JFLW01000117 891 0
JFLW01000122 841 0
JFLW01000067 832 0
JFLW01000023 829 0
JFLW01000061 765 0
JFLW01000070 710 0
JFLW01000109 697 0
JFLW01000110 641 0
JFLW01000069 633 0
JFLW01000075 600 0
JFLW01000030 596 0
JFLW01000118 591 0
JFLW01000071 585 0
JFLW01000078 572 0
JFLW01000083 569 0
JFLW01000014 568 0
JFLW01000093 555 0
JFLW01000074 532 0
JFLW01000004 526 0
JFLW01000072 520 0
JFLW01000016 519 0
JFLW01000065 518 0
JFLW01000108 492 0
JFLW01000012 487 0
JFLW01000054 457 0
JFLW01000081 450 0
JFLW01000019 440 0
JFLW01000008 437 0
JFLW01000060 436 0
JFLW01000007 429 0
JFLW01000112 425 0
JFLW01000055 424 0
JFLW01000046 411 0
JFLW01000115 401 0
JFLW01000096 389 0
JFLW01000050 386 0
JFLW01000077 373 0
JFLW01000053 368 0
JFLW01000020 364 0
JFLW01000064 362 0
JFLW01000028 351 0
JFLW01000010 337 0
JFLW01000080 336 0
JFLW01000062 324 0
JFLW01000018 314 0
JFLW01000098 310 0
JFLW01000120 309 0
JFLW01000119 301 0
JFLW01000009 290 0
JFLW01000113 287 0
JFLW01000099 285 0
JFLW01000066 272 0
JFLW01000097 271 0
JFLW01000017 266 0
JFLW01000052 266 0
JFLW01000111 266 0
JFLW01000114 265 0
JFLW01000073 263 0
JFLW01000005 260 0
JFLW01000051 257 0
JFLW01000068 247 0
JFLW01000048 246 0
JFLW01000032 244 0
JFLW01000039 239 0
JFLW01000036 237 0
JFLW01000037 232 0
JFLW01000091 230 0
JFLW01000024 230 0
JFLW01000034 220 0
JFLW01000094 220 0
JFLW01000095 214 0
JFLW01000035 210 0
JFLW01000011 209 0
JFLW01000006 206 0
JFLW01000090 203 0
JFLW01000038 203 0
Total 1,620,137 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635495.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635495.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635495.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635495.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635495.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635495.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635495.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635495.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635495.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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