cyanobase » Prochlorococcus sp. scB241_529O19

Prochlorococcus sp. scB241_529O19

Summary

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Data source name GCA_000635475.1
Full name Prochlorococcus sp. scB241_529O19 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLS01000028 241,711 0
JFLS01000007 232,183 0
JFLS01000073 138,263 0
JFLS01000072 114,765 0
JFLS01000045 114,253 0
JFLS01000002 68,494 0
JFLS01000061 62,225 0
JFLS01000129 60,445 0
JFLS01000064 40,784 0
JFLS01000022 37,048 0
JFLS01000001 16,834 0
JFLS01000132 15,857 0
JFLS01000143 14,658 0
JFLS01000053 13,393 0
JFLS01000062 10,156 0
JFLS01000008 8,485 0
JFLS01000046 8,470 0
JFLS01000023 8,455 0
JFLS01000009 7,170 0
JFLS01000024 6,706 0
JFLS01000133 6,467 0
JFLS01000131 5,817 0
JFLS01000130 3,672 0
JFLS01000048 3,130 0
JFLS01000029 3,050 0
JFLS01000010 2,073 0
JFLS01000128 1,962 0
JFLS01000066 1,724 0
JFLS01000101 1,644 0
JFLS01000003 1,605 0
JFLS01000027 1,452 0
JFLS01000051 1,414 0
JFLS01000013 1,299 0
JFLS01000052 1,224 0
JFLS01000054 1,183 0
JFLS01000065 1,176 0
JFLS01000070 1,150 0
JFLS01000126 1,049 0
JFLS01000047 1,043 0
JFLS01000074 1,039 0
JFLS01000068 999 0
JFLS01000049 927 0
JFLS01000092 883 0
JFLS01000104 860 0
JFLS01000108 791 0
JFLS01000071 762 0
JFLS01000097 741 0
JFLS01000011 727 0
JFLS01000106 712 0
JFLS01000098 677 0
JFLS01000020 674 0
JFLS01000139 647 0
JFLS01000100 642 0
JFLS01000094 617 0
JFLS01000021 616 0
JFLS01000116 612 0
JFLS01000107 587 0
JFLS01000026 553 0
JFLS01000012 523 0
JFLS01000069 522 0
JFLS01000120 519 0
JFLS01000079 495 0
JFLS01000059 480 0
JFLS01000055 476 0
JFLS01000085 476 0
JFLS01000110 471 0
JFLS01000044 467 0
JFLS01000099 462 0
JFLS01000149 462 0
JFLS01000112 455 0
JFLS01000030 454 0
JFLS01000146 453 0
JFLS01000080 438 0
JFLS01000123 433 0
JFLS01000036 431 0
JFLS01000086 422 0
JFLS01000081 413 0
JFLS01000118 405 0
JFLS01000148 403 0
JFLS01000084 379 0
JFLS01000016 370 0
JFLS01000088 370 0
JFLS01000067 361 0
JFLS01000093 353 0
JFLS01000103 353 0
JFLS01000125 347 0
JFLS01000105 343 0
JFLS01000031 340 0
JFLS01000042 333 0
JFLS01000056 330 0
JFLS01000019 330 0
JFLS01000091 326 0
JFLS01000095 325 0
JFLS01000050 324 0
JFLS01000114 323 0
JFLS01000102 323 0
JFLS01000034 322 0
JFLS01000145 318 0
JFLS01000141 316 0
JFLS01000018 312 0
JFLS01000142 307 0
JFLS01000122 305 0
JFLS01000078 303 0
JFLS01000096 302 0
JFLS01000075 297 0
JFLS01000040 295 0
JFLS01000060 292 0
JFLS01000083 289 0
JFLS01000039 287 0
JFLS01000089 285 0
JFLS01000082 276 0
JFLS01000063 276 0
JFLS01000037 274 0
JFLS01000119 270 0
JFLS01000124 269 0
JFLS01000077 269 0
JFLS01000113 267 0
JFLS01000017 265 0
JFLS01000140 262 0
JFLS01000135 260 0
JFLS01000057 258 0
JFLS01000033 258 0
JFLS01000058 255 0
JFLS01000076 252 0
JFLS01000032 251 0
JFLS01000144 243 0
JFLS01000127 241 0
JFLS01000041 241 0
JFLS01000004 240 0
JFLS01000035 240 0
JFLS01000138 238 0
JFLS01000111 234 0
JFLS01000006 234 0
JFLS01000087 233 0
JFLS01000115 231 0
JFLS01000025 230 0
JFLS01000090 229 0
JFLS01000038 227 0
JFLS01000109 227 0
JFLS01000014 227 0
JFLS01000005 226 0
JFLS01000043 226 0
JFLS01000121 211 0
JFLS01000147 210 0
JFLS01000134 208 0
JFLS01000117 207 0
JFLS01000015 203 0
JFLS01000137 201 0
JFLS01000136 200 0
Total 1,305,644 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635475.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635475.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635475.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635475.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635475.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635475.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635475.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635475.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635475.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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