cyanobase » Prochlorococcus sp. scB241_529J16

Prochlorococcus sp. scB241_529J16

Summary

? | +/- | Top
Data source name GCA_000635455.1
Full name Prochlorococcus sp. scB241_529J16 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFLR01000052 107,462 0
JFLR01000014 100,420 0
JFLR01000030 79,943 0
JFLR01000301 69,579 0
JFLR01000061 52,501 0
JFLR01000351 51,087 0
JFLR01000006 42,841 0
JFLR01000027 35,622 0
JFLR01000041 28,669 0
JFLR01000033 26,634 0
JFLR01000053 20,789 0
JFLR01000237 20,785 0
JFLR01000002 17,465 0
JFLR01000141 16,505 0
JFLR01000138 15,081 0
JFLR01000139 13,496 0
JFLR01000032 12,469 0
JFLR01000084 11,817 0
JFLR01000300 9,193 0
JFLR01000185 8,575 0
JFLR01000252 7,847 0
JFLR01000234 7,331 0
JFLR01000007 6,173 0
JFLR01000238 4,840 0
JFLR01000034 4,685 0
JFLR01000090 3,915 0
JFLR01000136 3,661 0
JFLR01000373 3,239 0
JFLR01000044 2,861 0
JFLR01000235 2,371 0
JFLR01000024 2,299 0
JFLR01000228 2,195 0
JFLR01000137 2,108 0
JFLR01000009 2,043 0
JFLR01000026 1,949 0
JFLR01000123 1,770 0
JFLR01000082 1,695 0
JFLR01000129 1,623 0
JFLR01000379 1,622 0
JFLR01000132 1,618 0
JFLR01000143 1,590 0
JFLR01000152 1,501 0
JFLR01000140 1,455 0
JFLR01000005 1,397 0
JFLR01000334 1,371 0
JFLR01000013 1,343 0
JFLR01000056 1,309 0
JFLR01000133 1,254 0
JFLR01000134 1,150 0
JFLR01000236 1,134 0
JFLR01000253 1,100 0
JFLR01000062 1,070 0
JFLR01000227 1,051 0
JFLR01000135 1,049 0
JFLR01000250 1,034 0
JFLR01000130 1,020 0
JFLR01000126 977 0
JFLR01000172 968 0
JFLR01000154 924 0
JFLR01000004 868 0
JFLR01000043 860 0
JFLR01000072 853 0
JFLR01000028 833 0
JFLR01000124 823 0
JFLR01000248 813 0
JFLR01000001 795 0
JFLR01000242 793 0
JFLR01000065 788 0
JFLR01000031 776 0
JFLR01000029 764 0
JFLR01000262 750 0
JFLR01000083 749 0
JFLR01000263 733 0
JFLR01000036 714 0
JFLR01000230 712 0
JFLR01000087 712 0
JFLR01000118 674 0
JFLR01000205 672 0
JFLR01000042 668 0
JFLR01000245 662 0
JFLR01000361 659 0
JFLR01000060 657 0
JFLR01000039 657 0
JFLR01000156 655 0
JFLR01000078 637 0
JFLR01000211 630 0
JFLR01000017 630 0
JFLR01000259 626 0
JFLR01000040 617 0
JFLR01000246 616 0
JFLR01000038 613 0
JFLR01000261 610 0
JFLR01000095 610 0
JFLR01000215 601 0
JFLR01000131 598 0
JFLR01000196 598 0
JFLR01000012 597 0
JFLR01000336 597 0
JFLR01000064 597 0
JFLR01000209 594 0
JFLR01000231 578 0
JFLR01000275 574 0
JFLR01000356 572 0
JFLR01000222 569 0
JFLR01000075 563 0
JFLR01000066 555 0
JFLR01000286 554 0
JFLR01000085 546 0
JFLR01000073 545 0
JFLR01000207 543 0
JFLR01000216 543 0
JFLR01000144 538 0
JFLR01000331 532 0
JFLR01000212 525 0
JFLR01000344 522 0
JFLR01000257 521 0
JFLR01000074 521 0
JFLR01000256 509 0
JFLR01000206 507 0
JFLR01000223 505 0
JFLR01000220 502 0
JFLR01000375 501 0
JFLR01000365 500 0
JFLR01000159 499 0
JFLR01000335 497 0
JFLR01000350 497 0
JFLR01000363 494 0
JFLR01000046 486 0
JFLR01000055 485 0
JFLR01000148 485 0
JFLR01000181 477 0
JFLR01000384 476 0
JFLR01000362 472 0
JFLR01000098 471 0
JFLR01000160 471 0
JFLR01000380 467 0
JFLR01000081 467 0
JFLR01000182 461 0
JFLR01000071 459 0
JFLR01000079 449 0
JFLR01000258 448 0
JFLR01000059 446 0
JFLR01000164 445 0
JFLR01000122 443 0
JFLR01000176 441 0
JFLR01000063 441 0
JFLR01000298 440 0
JFLR01000277 438 0
JFLR01000020 433 0
JFLR01000324 432 0
JFLR01000311 430 0
JFLR01000232 428 0
JFLR01000383 425 0
JFLR01000113 424 0
JFLR01000089 420 0
JFLR01000008 418 0
JFLR01000162 414 0
JFLR01000023 413 0
JFLR01000076 413 0
JFLR01000309 412 0
JFLR01000049 406 0
JFLR01000241 405 0
JFLR01000269 405 0
JFLR01000128 402 0
JFLR01000107 402 0
JFLR01000125 402 0
JFLR01000221 401 0
JFLR01000092 397 0
JFLR01000283 397 0
JFLR01000308 396 0
JFLR01000254 396 0
JFLR01000161 394 0
JFLR01000274 389 0
JFLR01000145 388 0
JFLR01000342 384 0
JFLR01000166 384 0
JFLR01000249 381 0
JFLR01000142 381 0
JFLR01000203 380 0
JFLR01000080 378 0
JFLR01000051 377 0
JFLR01000382 376 0
JFLR01000329 375 0
JFLR01000264 371 0
JFLR01000326 368 0
JFLR01000381 368 0
JFLR01000332 367 0
JFLR01000219 366 0
JFLR01000108 365 0
JFLR01000265 364 0
JFLR01000183 364 0
JFLR01000202 363 0
JFLR01000099 363 0
JFLR01000341 361 0
JFLR01000120 359 0
JFLR01000251 356 0
JFLR01000213 354 0
JFLR01000119 350 0
JFLR01000288 349 0
JFLR01000204 349 0
JFLR01000294 348 0
JFLR01000291 348 0
JFLR01000194 346 0
JFLR01000290 344 0
JFLR01000339 344 0
JFLR01000272 344 0
JFLR01000104 343 0
JFLR01000025 343 0
JFLR01000101 343 0
JFLR01000179 341 0
JFLR01000346 338 0
JFLR01000224 336 0
JFLR01000306 335 0
JFLR01000192 334 0
JFLR01000003 334 0
JFLR01000054 332 0
JFLR01000180 332 0
JFLR01000320 328 0
JFLR01000173 328 0
JFLR01000370 323 0
JFLR01000195 322 0
JFLR01000096 321 0
JFLR01000153 320 0
JFLR01000281 320 0
JFLR01000349 320 0
JFLR01000271 319 0
JFLR01000157 318 0
JFLR01000158 318 0
JFLR01000121 317 0
JFLR01000293 317 0
JFLR01000302 312 0
JFLR01000016 312 0
JFLR01000117 312 0
JFLR01000146 311 0
JFLR01000323 311 0
JFLR01000353 311 0
JFLR01000100 310 0
JFLR01000050 307 0
JFLR01000247 305 0
JFLR01000187 303 0
JFLR01000035 302 0
JFLR01000376 300 0
JFLR01000371 300 0
JFLR01000282 299 0
JFLR01000244 298 0
JFLR01000355 298 0
JFLR01000337 298 0
JFLR01000343 297 0
JFLR01000201 297 0
JFLR01000086 297 0
JFLR01000186 296 0
JFLR01000366 295 0
JFLR01000116 294 0
JFLR01000328 294 0
JFLR01000193 292 0
JFLR01000057 291 0
JFLR01000155 290 0
JFLR01000018 289 0
JFLR01000165 289 0
JFLR01000115 288 0
JFLR01000377 288 0
JFLR01000364 288 0
JFLR01000352 287 0
JFLR01000210 287 0
JFLR01000151 287 0
JFLR01000169 286 0
JFLR01000296 285 0
JFLR01000174 284 0
JFLR01000200 284 0
JFLR01000266 284 0
JFLR01000177 283 0
JFLR01000019 282 0
JFLR01000348 282 0
JFLR01000097 282 0
JFLR01000070 281 0
JFLR01000317 280 0
JFLR01000190 280 0
JFLR01000354 279 0
JFLR01000240 279 0
JFLR01000289 278 0
JFLR01000011 277 0
JFLR01000360 276 0
JFLR01000058 276 0
JFLR01000170 276 0
JFLR01000105 276 0
JFLR01000367 275 0
JFLR01000189 275 0
JFLR01000297 275 0
JFLR01000347 275 0
JFLR01000178 273 0
JFLR01000167 272 0
JFLR01000315 272 0
JFLR01000239 266 0
JFLR01000045 265 0
JFLR01000243 265 0
JFLR01000149 263 0
JFLR01000280 262 0
JFLR01000268 261 0
JFLR01000218 261 0
JFLR01000217 259 0
JFLR01000069 259 0
JFLR01000372 258 0
JFLR01000188 258 0
JFLR01000233 257 0
JFLR01000048 257 0
JFLR01000333 257 0
JFLR01000010 256 0
JFLR01000285 254 0
JFLR01000368 254 0
JFLR01000307 253 0
JFLR01000112 250 0
JFLR01000273 250 0
JFLR01000226 249 0
JFLR01000338 248 0
JFLR01000327 247 0
JFLR01000093 245 0
JFLR01000313 245 0
JFLR01000260 244 0
JFLR01000094 242 0
JFLR01000114 240 0
JFLR01000199 239 0
JFLR01000015 239 0
JFLR01000168 238 0
JFLR01000358 236 0
JFLR01000102 236 0
JFLR01000345 236 0
JFLR01000021 234 0
JFLR01000208 234 0
JFLR01000322 232 0
JFLR01000191 232 0
JFLR01000111 232 0
JFLR01000305 232 0
JFLR01000357 231 0
JFLR01000198 230 0
JFLR01000279 228 0
JFLR01000292 228 0
JFLR01000312 228 0
JFLR01000330 228 0
JFLR01000150 227 0
JFLR01000163 227 0
JFLR01000295 226 0
JFLR01000171 225 0
JFLR01000184 224 0
JFLR01000374 224 0
JFLR01000299 224 0
JFLR01000255 224 0
JFLR01000110 224 0
JFLR01000369 224 0
JFLR01000318 223 0
JFLR01000325 221 0
JFLR01000225 221 0
JFLR01000088 221 0
JFLR01000319 221 0
JFLR01000340 220 0
JFLR01000278 220 0
JFLR01000310 219 0
JFLR01000270 218 0
JFLR01000037 217 0
JFLR01000067 216 0
JFLR01000314 216 0
JFLR01000197 213 0
JFLR01000103 213 0
JFLR01000321 212 0
JFLR01000091 212 0
JFLR01000077 212 0
JFLR01000287 211 0
JFLR01000047 209 0
JFLR01000109 208 0
JFLR01000214 207 0
JFLR01000267 207 0
JFLR01000127 204 0
JFLR01000068 203 0
JFLR01000276 203 0
JFLR01000147 203 0
JFLR01000284 203 0
JFLR01000359 203 0
JFLR01000304 201 0
JFLR01000106 200 0
JFLR01000303 200 0
JFLR01000316 200 0
JFLR01000229 193 0
JFLR01000022 185 0
JFLR01000378 181 0
JFLR01000175 161 0
Total 951,023 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000635455.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635455.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635455.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635455.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635455.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635455.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635455.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635455.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635455.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer