cyanobase » Prochlorococcus sp. scB241_529J11

Prochlorococcus sp. scB241_529J11

Summary

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Data source name GCA_000635435.1
Full name Prochlorococcus sp. scB241_529J11 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLP01000182 240,532 0
JFLP01000057 205,810 0
JFLP01000013 198,383 0
JFLP01000159 84,598 0
JFLP01000053 77,524 0
JFLP01000158 65,932 0
JFLP01000181 46,561 0
JFLP01000090 44,023 0
JFLP01000113 36,252 0
JFLP01000054 33,682 0
JFLP01000055 30,576 0
JFLP01000089 16,780 0
JFLP01000112 14,202 0
JFLP01000111 12,787 0
JFLP01000183 11,663 0
JFLP01000109 11,631 0
JFLP01000179 9,376 0
JFLP01000051 8,860 0
JFLP01000017 6,990 0
JFLP01000056 6,572 0
JFLP01000161 5,868 0
JFLP01000116 5,278 0
JFLP01000085 5,058 0
JFLP01000044 4,989 0
JFLP01000038 4,981 0
JFLP01000052 4,956 0
JFLP01000184 4,489 0
JFLP01000061 4,488 0
JFLP01000180 4,147 0
JFLP01000062 3,676 0
JFLP01000041 3,247 0
JFLP01000045 3,041 0
JFLP01000156 2,752 0
JFLP01000059 2,681 0
JFLP01000160 2,660 0
JFLP01000058 2,566 0
JFLP01000046 2,523 0
JFLP01000163 2,490 0
JFLP01000021 2,442 0
JFLP01000039 2,257 0
JFLP01000093 2,186 0
JFLP01000178 2,126 0
JFLP01000091 2,091 0
JFLP01000047 2,017 0
JFLP01000014 2,008 0
JFLP01000125 1,867 0
JFLP01000162 1,832 0
JFLP01000198 1,783 0
JFLP01000148 1,738 0
JFLP01000175 1,704 0
JFLP01000174 1,634 0
JFLP01000191 1,631 0
JFLP01000177 1,539 0
JFLP01000117 1,484 0
JFLP01000001 1,479 0
JFLP01000036 1,461 0
JFLP01000172 1,434 0
JFLP01000077 1,421 0
JFLP01000011 1,260 0
JFLP01000012 1,225 0
JFLP01000084 1,191 0
JFLP01000064 1,179 0
JFLP01000066 1,165 0
JFLP01000018 1,095 0
JFLP01000067 1,037 0
JFLP01000176 1,021 0
JFLP01000020 1,009 0
JFLP01000203 987 0
JFLP01000115 984 0
JFLP01000043 984 0
JFLP01000080 970 0
JFLP01000087 960 0
JFLP01000092 925 0
JFLP01000135 896 0
JFLP01000193 852 0
JFLP01000019 831 0
JFLP01000166 829 0
JFLP01000050 827 0
JFLP01000086 821 0
JFLP01000070 821 0
JFLP01000149 785 0
JFLP01000083 761 0
JFLP01000155 760 0
JFLP01000136 740 0
JFLP01000088 732 0
JFLP01000076 701 0
JFLP01000094 698 0
JFLP01000114 680 0
JFLP01000185 678 0
JFLP01000035 668 0
JFLP01000060 667 0
JFLP01000102 650 0
JFLP01000134 642 0
JFLP01000049 641 0
JFLP01000192 638 0
JFLP01000040 628 0
JFLP01000152 624 0
JFLP01000009 623 0
JFLP01000199 612 0
JFLP01000097 611 0
JFLP01000169 608 0
JFLP01000124 589 0
JFLP01000168 553 0
JFLP01000164 541 0
JFLP01000042 537 0
JFLP01000165 535 0
JFLP01000081 525 0
JFLP01000063 515 0
JFLP01000037 511 0
JFLP01000005 500 0
JFLP01000008 500 0
JFLP01000095 498 0
JFLP01000186 498 0
JFLP01000146 493 0
JFLP01000133 491 0
JFLP01000075 478 0
JFLP01000028 475 0
JFLP01000015 459 0
JFLP01000007 450 0
JFLP01000098 443 0
JFLP01000122 442 0
JFLP01000120 437 0
JFLP01000029 434 0
JFLP01000140 428 0
JFLP01000107 427 0
JFLP01000127 416 0
JFLP01000033 413 0
JFLP01000025 402 0
JFLP01000119 380 0
JFLP01000143 360 0
JFLP01000024 360 0
JFLP01000204 359 0
JFLP01000154 354 0
JFLP01000022 338 0
JFLP01000151 331 0
JFLP01000082 327 0
JFLP01000132 322 0
JFLP01000170 319 0
JFLP01000128 318 0
JFLP01000065 313 0
JFLP01000104 311 0
JFLP01000078 306 0
JFLP01000131 305 0
JFLP01000144 304 0
JFLP01000103 302 0
JFLP01000171 302 0
JFLP01000108 300 0
JFLP01000101 297 0
JFLP01000142 294 0
JFLP01000105 291 0
JFLP01000141 291 0
JFLP01000195 289 0
JFLP01000100 289 0
JFLP01000096 286 0
JFLP01000139 285 0
JFLP01000031 284 0
JFLP01000129 281 0
JFLP01000006 279 0
JFLP01000030 279 0
JFLP01000072 277 0
JFLP01000205 274 0
JFLP01000137 273 0
JFLP01000118 270 0
JFLP01000121 269 0
JFLP01000002 268 0
JFLP01000099 268 0
JFLP01000194 266 0
JFLP01000157 264 0
JFLP01000150 261 0
JFLP01000027 260 0
JFLP01000147 255 0
JFLP01000110 254 0
JFLP01000010 249 0
JFLP01000026 246 0
JFLP01000004 245 0
JFLP01000126 240 0
JFLP01000034 240 0
JFLP01000153 238 0
JFLP01000167 237 0
JFLP01000073 235 0
JFLP01000173 235 0
JFLP01000074 234 0
JFLP01000079 233 0
JFLP01000196 233 0
JFLP01000189 231 0
JFLP01000188 230 0
JFLP01000187 227 0
JFLP01000145 222 0
JFLP01000106 221 0
JFLP01000048 220 0
JFLP01000201 219 0
JFLP01000071 219 0
JFLP01000197 215 0
JFLP01000003 212 0
JFLP01000016 212 0
JFLP01000190 212 0
JFLP01000200 210 0
JFLP01000068 209 0
JFLP01000023 208 0
JFLP01000069 206 0
JFLP01000130 206 0
JFLP01000032 204 0
JFLP01000138 202 0
JFLP01000123 201 0
JFLP01000202 201 0
Total 1,338,231 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635435.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635435.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635435.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635435.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635435.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635435.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635435.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635435.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635435.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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