cyanobase » Prochlorococcus sp. scB241_529B19

Prochlorococcus sp. scB241_529B19

Summary

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Data source name GCA_000635415.1
Full name Prochlorococcus sp. scB241_529B19 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLM01000001 292,405 0
JFLM01000234 152,845 0
JFLM01000218 144,036 0
JFLM01000033 110,726 0
JFLM01000219 78,814 0
JFLM01000274 65,469 0
JFLM01000089 61,662 0
JFLM01000024 57,400 0
JFLM01000025 52,321 0
JFLM01000192 39,874 0
JFLM01000103 36,881 0
JFLM01000242 24,080 0
JFLM01000124 22,720 0
JFLM01000118 15,643 0
JFLM01000087 13,216 0
JFLM01000123 11,876 0
JFLM01000177 9,380 0
JFLM01000026 8,462 0
JFLM01000180 8,249 0
JFLM01000176 7,892 0
JFLM01000035 7,655 0
JFLM01000121 7,033 0
JFLM01000233 6,712 0
JFLM01000120 6,433 0
JFLM01000023 6,348 0
JFLM01000032 6,327 0
JFLM01000051 6,188 0
JFLM01000195 5,990 0
JFLM01000181 5,496 0
JFLM01000088 5,177 0
JFLM01000220 4,806 0
JFLM01000184 4,742 0
JFLM01000239 3,891 0
JFLM01000092 3,857 0
JFLM01000193 3,769 0
JFLM01000225 3,754 0
JFLM01000238 3,664 0
JFLM01000277 3,576 0
JFLM01000224 2,801 0
JFLM01000245 2,645 0
JFLM01000077 2,638 0
JFLM01000216 2,623 0
JFLM01000214 2,601 0
JFLM01000083 2,503 0
JFLM01000046 2,447 0
JFLM01000205 2,379 0
JFLM01000200 2,358 0
JFLM01000004 2,311 0
JFLM01000223 2,172 0
JFLM01000212 2,138 0
JFLM01000243 1,998 0
JFLM01000201 1,967 0
JFLM01000171 1,895 0
JFLM01000240 1,882 0
JFLM01000090 1,856 0
JFLM01000221 1,696 0
JFLM01000002 1,657 0
JFLM01000113 1,651 0
JFLM01000194 1,648 0
JFLM01000122 1,638 0
JFLM01000269 1,560 0
JFLM01000146 1,520 0
JFLM01000175 1,511 0
JFLM01000273 1,493 0
JFLM01000172 1,490 0
JFLM01000186 1,480 0
JFLM01000052 1,424 0
JFLM01000011 1,374 0
JFLM01000168 1,372 0
JFLM01000179 1,367 0
JFLM01000300 1,270 0
JFLM01000055 1,148 0
JFLM01000270 1,131 0
JFLM01000241 1,103 0
JFLM01000202 1,101 0
JFLM01000217 1,094 0
JFLM01000199 1,031 0
JFLM01000264 1,026 0
JFLM01000263 1,019 0
JFLM01000283 1,008 0
JFLM01000117 1,000 0
JFLM01000059 981 0
JFLM01000076 955 0
JFLM01000211 945 0
JFLM01000275 945 0
JFLM01000286 909 0
JFLM01000182 907 0
JFLM01000079 885 0
JFLM01000022 872 0
JFLM01000284 854 0
JFLM01000037 853 0
JFLM01000237 845 0
JFLM01000018 843 0
JFLM01000144 831 0
JFLM01000057 810 0
JFLM01000112 808 0
JFLM01000178 795 0
JFLM01000267 794 0
JFLM01000215 786 0
JFLM01000139 784 0
JFLM01000183 784 0
JFLM01000167 782 0
JFLM01000185 781 0
JFLM01000256 778 0
JFLM01000027 758 0
JFLM01000034 756 0
JFLM01000060 752 0
JFLM01000081 715 0
JFLM01000044 715 0
JFLM01000196 714 0
JFLM01000045 710 0
JFLM01000296 704 0
JFLM01000169 695 0
JFLM01000115 690 0
JFLM01000298 684 0
JFLM01000155 667 0
JFLM01000138 662 0
JFLM01000063 650 0
JFLM01000187 640 0
JFLM01000133 616 0
JFLM01000250 616 0
JFLM01000222 612 0
JFLM01000039 611 0
JFLM01000058 601 0
JFLM01000098 600 0
JFLM01000031 589 0
JFLM01000068 585 0
JFLM01000082 584 0
JFLM01000147 575 0
JFLM01000152 572 0
JFLM01000050 570 0
JFLM01000125 570 0
JFLM01000143 567 0
JFLM01000003 566 0
JFLM01000158 564 0
JFLM01000154 564 0
JFLM01000015 560 0
JFLM01000104 559 0
JFLM01000236 552 0
JFLM01000257 548 0
JFLM01000166 547 0
JFLM01000040 545 0
JFLM01000230 534 0
JFLM01000261 532 0
JFLM01000160 531 0
JFLM01000009 524 0
JFLM01000094 523 0
JFLM01000164 516 0
JFLM01000244 515 0
JFLM01000135 515 0
JFLM01000062 512 0
JFLM01000148 508 0
JFLM01000157 508 0
JFLM01000110 495 0
JFLM01000066 491 0
JFLM01000276 490 0
JFLM01000109 485 0
JFLM01000291 484 0
JFLM01000029 484 0
JFLM01000210 482 0
JFLM01000114 476 0
JFLM01000258 474 0
JFLM01000007 470 0
JFLM01000102 468 0
JFLM01000099 467 0
JFLM01000294 467 0
JFLM01000075 466 0
JFLM01000285 465 0
JFLM01000091 460 0
JFLM01000271 458 0
JFLM01000248 454 0
JFLM01000228 444 0
JFLM01000008 442 0
JFLM01000130 442 0
JFLM01000287 440 0
JFLM01000266 440 0
JFLM01000105 435 0
JFLM01000206 433 0
JFLM01000054 431 0
JFLM01000150 426 0
JFLM01000017 425 0
JFLM01000231 424 0
JFLM01000170 423 0
JFLM01000145 423 0
JFLM01000173 421 0
JFLM01000140 414 0
JFLM01000165 414 0
JFLM01000208 413 0
JFLM01000246 411 0
JFLM01000232 408 0
JFLM01000197 407 0
JFLM01000136 406 0
JFLM01000149 405 0
JFLM01000048 400 0
JFLM01000070 399 0
JFLM01000069 397 0
JFLM01000156 393 0
JFLM01000036 386 0
JFLM01000255 384 0
JFLM01000141 380 0
JFLM01000019 372 0
JFLM01000163 368 0
JFLM01000249 366 0
JFLM01000134 364 0
JFLM01000020 357 0
JFLM01000131 350 0
JFLM01000262 348 0
JFLM01000080 346 0
JFLM01000235 345 0
JFLM01000229 345 0
JFLM01000010 343 0
JFLM01000116 342 0
JFLM01000174 342 0
JFLM01000190 336 0
JFLM01000043 328 0
JFLM01000111 328 0
JFLM01000061 326 0
JFLM01000297 325 0
JFLM01000252 324 0
JFLM01000108 321 0
JFLM01000013 320 0
JFLM01000289 320 0
JFLM01000047 318 0
JFLM01000084 316 0
JFLM01000151 313 0
JFLM01000260 308 0
JFLM01000067 307 0
JFLM01000254 303 0
JFLM01000053 303 0
JFLM01000126 300 0
JFLM01000021 299 0
JFLM01000188 299 0
JFLM01000095 298 0
JFLM01000074 295 0
JFLM01000030 295 0
JFLM01000198 289 0
JFLM01000191 288 0
JFLM01000253 288 0
JFLM01000209 286 0
JFLM01000299 286 0
JFLM01000137 285 0
JFLM01000227 284 0
JFLM01000162 284 0
JFLM01000159 283 0
JFLM01000153 278 0
JFLM01000078 275 0
JFLM01000207 275 0
JFLM01000038 273 0
JFLM01000226 267 0
JFLM01000119 267 0
JFLM01000056 266 0
JFLM01000072 266 0
JFLM01000251 265 0
JFLM01000213 264 0
JFLM01000189 263 0
JFLM01000065 262 0
JFLM01000295 260 0
JFLM01000041 259 0
JFLM01000204 258 0
JFLM01000279 257 0
JFLM01000265 256 0
JFLM01000280 254 0
JFLM01000042 254 0
JFLM01000281 251 0
JFLM01000268 246 0
JFLM01000097 243 0
JFLM01000064 240 0
JFLM01000071 240 0
JFLM01000096 239 0
JFLM01000247 238 0
JFLM01000132 236 0
JFLM01000016 235 0
JFLM01000049 233 0
JFLM01000073 232 0
JFLM01000028 230 0
JFLM01000005 230 0
JFLM01000014 229 0
JFLM01000290 227 0
JFLM01000128 226 0
JFLM01000278 225 0
JFLM01000101 224 0
JFLM01000085 222 0
JFLM01000203 221 0
JFLM01000093 218 0
JFLM01000272 216 0
JFLM01000006 215 0
JFLM01000107 215 0
JFLM01000142 214 0
JFLM01000100 212 0
JFLM01000129 212 0
JFLM01000127 211 0
JFLM01000293 210 0
JFLM01000282 210 0
JFLM01000106 207 0
JFLM01000086 205 0
JFLM01000012 204 0
JFLM01000161 202 0
JFLM01000292 201 0
JFLM01000288 201 0
JFLM01000259 200 0
Total 1,480,309 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635415.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635415.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635415.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635415.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635415.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635415.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635415.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635415.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635415.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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