cyanobase » Prochlorococcus sp. scB241_528P18

Prochlorococcus sp. scB241_528P18

Summary

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Data source name GCA_000635395.1
Full name Prochlorococcus sp. scB241_528P18 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLL01000008 245,336 0
JFLL01000048 133,267 0
JFLL01000066 114,164 0
JFLL01000262 111,336 0
JFLL01000132 98,349 0
JFLL01000201 96,419 0
JFLL01000171 93,816 0
JFLL01000169 88,105 0
JFLL01000010 47,938 0
JFLL01000199 43,455 0
JFLL01000081 31,466 0
JFLL01000170 24,812 0
JFLL01000002 21,170 0
JFLL01000176 20,924 0
JFLL01000200 20,801 0
JFLL01000003 16,320 0
JFLL01000173 16,290 0
JFLL01000177 12,088 0
JFLL01000251 11,001 0
JFLL01000202 9,419 0
JFLL01000047 7,764 0
JFLL01000004 7,731 0
JFLL01000065 7,567 0
JFLL01000178 7,475 0
JFLL01000051 7,440 0
JFLL01000172 6,694 0
JFLL01000250 5,273 0
JFLL01000264 5,255 0
JFLL01000001 4,628 0
JFLL01000007 4,365 0
JFLL01000049 3,795 0
JFLL01000286 2,898 0
JFLL01000005 2,745 0
JFLL01000009 2,508 0
JFLL01000050 2,400 0
JFLL01000115 2,345 0
JFLL01000271 2,298 0
JFLL01000252 2,053 0
JFLL01000246 1,866 0
JFLL01000273 1,692 0
JFLL01000014 1,596 0
JFLL01000022 1,430 0
JFLL01000235 1,427 0
JFLL01000133 1,343 0
JFLL01000294 1,299 0
JFLL01000165 1,282 0
JFLL01000116 1,279 0
JFLL01000277 1,233 0
JFLL01000263 1,189 0
JFLL01000122 1,173 0
JFLL01000268 1,146 0
JFLL01000006 1,114 0
JFLL01000147 1,073 0
JFLL01000079 1,033 0
JFLL01000162 1,018 0
JFLL01000168 1,013 0
JFLL01000232 1,008 0
JFLL01000032 981 0
JFLL01000181 980 0
JFLL01000198 975 0
JFLL01000291 961 0
JFLL01000287 953 0
JFLL01000265 917 0
JFLL01000042 915 0
JFLL01000082 850 0
JFLL01000257 838 0
JFLL01000121 830 0
JFLL01000230 806 0
JFLL01000276 800 0
JFLL01000220 792 0
JFLL01000071 785 0
JFLL01000275 767 0
JFLL01000278 767 0
JFLL01000075 757 0
JFLL01000236 743 0
JFLL01000225 732 0
JFLL01000123 723 0
JFLL01000249 721 0
JFLL01000290 717 0
JFLL01000128 707 0
JFLL01000248 700 0
JFLL01000159 690 0
JFLL01000245 685 0
JFLL01000021 683 0
JFLL01000272 677 0
JFLL01000174 676 0
JFLL01000053 672 0
JFLL01000247 655 0
JFLL01000241 648 0
JFLL01000089 647 0
JFLL01000161 629 0
JFLL01000013 625 0
JFLL01000029 624 0
JFLL01000080 623 0
JFLL01000167 616 0
JFLL01000228 612 0
JFLL01000043 608 0
JFLL01000025 605 0
JFLL01000233 597 0
JFLL01000255 595 0
JFLL01000183 591 0
JFLL01000185 589 0
JFLL01000180 586 0
JFLL01000259 579 0
JFLL01000111 573 0
JFLL01000149 565 0
JFLL01000131 563 0
JFLL01000072 559 0
JFLL01000119 556 0
JFLL01000028 556 0
JFLL01000242 552 0
JFLL01000045 548 0
JFLL01000260 545 0
JFLL01000274 540 0
JFLL01000145 531 0
JFLL01000026 526 0
JFLL01000179 523 0
JFLL01000239 514 0
JFLL01000033 513 0
JFLL01000016 512 0
JFLL01000253 509 0
JFLL01000106 508 0
JFLL01000238 506 0
JFLL01000086 497 0
JFLL01000214 489 0
JFLL01000175 487 0
JFLL01000037 485 0
JFLL01000231 485 0
JFLL01000196 482 0
JFLL01000044 482 0
JFLL01000113 478 0
JFLL01000046 474 0
JFLL01000281 473 0
JFLL01000146 472 0
JFLL01000087 472 0
JFLL01000292 470 0
JFLL01000256 460 0
JFLL01000102 455 0
JFLL01000261 453 0
JFLL01000223 447 0
JFLL01000227 443 0
JFLL01000157 442 0
JFLL01000148 442 0
JFLL01000040 439 0
JFLL01000210 431 0
JFLL01000215 430 0
JFLL01000077 430 0
JFLL01000012 429 0
JFLL01000155 429 0
JFLL01000207 428 0
JFLL01000055 428 0
JFLL01000280 421 0
JFLL01000015 420 0
JFLL01000282 418 0
JFLL01000269 414 0
JFLL01000243 410 0
JFLL01000103 405 0
JFLL01000027 401 0
JFLL01000130 397 0
JFLL01000060 396 0
JFLL01000204 391 0
JFLL01000092 390 0
JFLL01000099 383 0
JFLL01000237 380 0
JFLL01000134 380 0
JFLL01000224 380 0
JFLL01000156 380 0
JFLL01000144 378 0
JFLL01000108 377 0
JFLL01000052 374 0
JFLL01000117 373 0
JFLL01000160 372 0
JFLL01000226 370 0
JFLL01000118 368 0
JFLL01000120 365 0
JFLL01000197 365 0
JFLL01000083 362 0
JFLL01000182 361 0
JFLL01000184 360 0
JFLL01000285 359 0
JFLL01000166 356 0
JFLL01000069 356 0
JFLL01000018 356 0
JFLL01000191 352 0
JFLL01000112 346 0
JFLL01000206 345 0
JFLL01000279 344 0
JFLL01000056 343 0
JFLL01000114 342 0
JFLL01000104 342 0
JFLL01000267 340 0
JFLL01000088 339 0
JFLL01000062 336 0
JFLL01000193 336 0
JFLL01000091 334 0
JFLL01000061 332 0
JFLL01000293 328 0
JFLL01000164 309 0
JFLL01000090 309 0
JFLL01000038 308 0
JFLL01000295 308 0
JFLL01000205 306 0
JFLL01000030 302 0
JFLL01000031 302 0
JFLL01000158 302 0
JFLL01000109 298 0
JFLL01000017 297 0
JFLL01000135 296 0
JFLL01000163 295 0
JFLL01000126 291 0
JFLL01000100 288 0
JFLL01000064 288 0
JFLL01000024 285 0
JFLL01000140 283 0
JFLL01000186 282 0
JFLL01000270 281 0
JFLL01000208 276 0
JFLL01000067 276 0
JFLL01000057 275 0
JFLL01000124 273 0
JFLL01000054 273 0
JFLL01000203 272 0
JFLL01000192 272 0
JFLL01000189 270 0
JFLL01000216 266 0
JFLL01000219 266 0
JFLL01000070 264 0
JFLL01000136 261 0
JFLL01000094 261 0
JFLL01000095 260 0
JFLL01000063 260 0
JFLL01000212 258 0
JFLL01000254 258 0
JFLL01000244 258 0
JFLL01000258 256 0
JFLL01000266 255 0
JFLL01000059 255 0
JFLL01000221 253 0
JFLL01000035 251 0
JFLL01000129 250 0
JFLL01000154 245 0
JFLL01000110 245 0
JFLL01000034 244 0
JFLL01000150 243 0
JFLL01000142 242 0
JFLL01000023 242 0
JFLL01000019 241 0
JFLL01000073 241 0
JFLL01000084 240 0
JFLL01000137 239 0
JFLL01000068 237 0
JFLL01000041 236 0
JFLL01000152 236 0
JFLL01000076 235 0
JFLL01000240 235 0
JFLL01000194 233 0
JFLL01000105 231 0
JFLL01000283 231 0
JFLL01000187 229 0
JFLL01000078 229 0
JFLL01000211 229 0
JFLL01000151 226 0
JFLL01000195 225 0
JFLL01000229 225 0
JFLL01000213 224 0
JFLL01000074 223 0
JFLL01000039 221 0
JFLL01000036 221 0
JFLL01000143 218 0
JFLL01000153 218 0
JFLL01000284 217 0
JFLL01000011 217 0
JFLL01000058 217 0
JFLL01000141 217 0
JFLL01000096 216 0
JFLL01000020 214 0
JFLL01000138 212 0
JFLL01000289 211 0
JFLL01000125 211 0
JFLL01000234 210 0
JFLL01000085 210 0
JFLL01000107 209 0
JFLL01000188 208 0
JFLL01000209 207 0
JFLL01000217 207 0
JFLL01000218 206 0
JFLL01000127 205 0
JFLL01000093 205 0
JFLL01000190 203 0
JFLL01000101 203 0
JFLL01000288 201 0
JFLL01000098 200 0
JFLL01000222 200 0
JFLL01000139 200 0
JFLL01000097 196 0
Total 1,464,296 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635395.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635395.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635395.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635395.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635395.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635395.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635395.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635395.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635395.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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