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cyanobase » Prochlorococcus sp. scB241_527P5

Prochlorococcus sp. scB241_527P5

Summary

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Data source name GCA_000635375.1
Full name Prochlorococcus sp. scB241_527P5
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLC01000150 304,938 0
JFLC01000037 176,212 0
JFLC01000159 159,380 0
JFLC01000151 106,783 0
JFLC01000154 55,214 0
JFLC01000161 53,108 0
JFLC01000138 52,589 0
JFLC01000087 49,842 0
JFLC01000003 46,740 0
JFLC01000162 37,308 0
JFLC01000086 31,920 0
JFLC01000160 26,080 0
JFLC01000005 24,907 0
JFLC01000133 18,639 0
JFLC01000152 17,193 0
JFLC01000137 14,613 0
JFLC01000229 13,755 0
JFLC01000035 11,923 0
JFLC01000147 8,548 0
JFLC01000267 8,541 0
JFLC01000002 7,952 0
JFLC01000184 7,783 0
JFLC01000084 7,585 0
JFLC01000228 7,285 0
JFLC01000163 7,161 0
JFLC01000149 6,544 0
JFLC01000227 6,174 0
JFLC01000034 6,157 0
JFLC01000269 4,499 0
JFLC01000004 4,298 0
JFLC01000186 3,777 0
JFLC01000083 3,410 0
JFLC01000164 3,358 0
JFLC01000165 2,846 0
JFLC01000001 2,577 0
JFLC01000096 2,449 0
JFLC01000038 2,442 0
JFLC01000230 2,414 0
JFLC01000141 2,409 0
JFLC01000032 2,393 0
JFLC01000148 2,318 0
JFLC01000085 2,314 0
JFLC01000187 2,212 0
JFLC01000033 2,075 0
JFLC01000090 2,063 0
JFLC01000315 2,028 0
JFLC01000181 1,842 0
JFLC01000297 1,789 0
JFLC01000056 1,785 0
JFLC01000089 1,577 0
JFLC01000082 1,469 0
JFLC01000323 1,434 0
JFLC01000218 1,431 0
JFLC01000088 1,420 0
JFLC01000225 1,417 0
JFLC01000199 1,414 0
JFLC01000097 1,406 0
JFLC01000277 1,303 0
JFLC01000092 1,296 0
JFLC01000166 1,279 0
JFLC01000281 1,272 0
JFLC01000266 1,251 0
JFLC01000094 1,225 0
JFLC01000198 1,209 0
JFLC01000041 1,151 0
JFLC01000298 1,108 0
JFLC01000031 1,092 0
JFLC01000265 1,067 0
JFLC01000299 1,060 0
JFLC01000216 1,032 0
JFLC01000019 1,032 0
JFLC01000105 985 0
JFLC01000022 960 0
JFLC01000317 957 0
JFLC01000135 949 0
JFLC01000039 946 0
JFLC01000036 944 0
JFLC01000139 932 0
JFLC01000173 920 0
JFLC01000258 899 0
JFLC01000252 893 0
JFLC01000182 888 0
JFLC01000254 884 0
JFLC01000213 874 0
JFLC01000202 864 0
JFLC01000153 851 0
JFLC01000142 839 0
JFLC01000255 835 0
JFLC01000156 831 0
JFLC01000270 825 0
JFLC01000051 825 0
JFLC01000146 820 0
JFLC01000006 805 0
JFLC01000251 804 0
JFLC01000192 802 0
JFLC01000134 792 0
JFLC01000268 792 0
JFLC01000222 782 0
JFLC01000233 776 0
JFLC01000264 766 0
JFLC01000272 766 0
JFLC01000236 715 0
JFLC01000157 713 0
JFLC01000235 706 0
JFLC01000262 703 0
JFLC01000174 698 0
JFLC01000171 695 0
JFLC01000279 691 0
JFLC01000015 688 0
JFLC01000208 680 0
JFLC01000300 672 0
JFLC01000080 660 0
JFLC01000210 654 0
JFLC01000095 647 0
JFLC01000214 644 0
JFLC01000275 635 0
JFLC01000055 625 0
JFLC01000200 618 0
JFLC01000119 611 0
JFLC01000054 605 0
JFLC01000248 602 0
JFLC01000023 602 0
JFLC01000028 589 0
JFLC01000231 587 0
JFLC01000116 576 0
JFLC01000311 573 0
JFLC01000075 573 0
JFLC01000112 564 0
JFLC01000280 561 0
JFLC01000253 552 0
JFLC01000304 551 0
JFLC01000244 548 0
JFLC01000306 540 0
JFLC01000053 537 0
JFLC01000027 534 0
JFLC01000099 526 0
JFLC01000246 521 0
JFLC01000318 515 0
JFLC01000303 507 0
JFLC01000155 504 0
JFLC01000118 495 0
JFLC01000204 494 0
JFLC01000021 489 0
JFLC01000052 489 0
JFLC01000169 486 0
JFLC01000143 483 0
JFLC01000106 482 0
JFLC01000247 479 0
JFLC01000206 475 0
JFLC01000314 474 0
JFLC01000188 471 0
JFLC01000069 470 0
JFLC01000120 470 0
JFLC01000177 469 0
JFLC01000132 467 0
JFLC01000029 463 0
JFLC01000307 458 0
JFLC01000271 447 0
JFLC01000091 446 0
JFLC01000209 446 0
JFLC01000223 430 0
JFLC01000043 429 0
JFLC01000109 428 0
JFLC01000276 419 0
JFLC01000115 417 0
JFLC01000185 417 0
JFLC01000040 416 0
JFLC01000212 405 0
JFLC01000104 404 0
JFLC01000183 402 0
JFLC01000195 402 0
JFLC01000123 401 0
JFLC01000077 399 0
JFLC01000114 399 0
JFLC01000030 399 0
JFLC01000020 398 0
JFLC01000066 396 0
JFLC01000301 393 0
JFLC01000250 385 0
JFLC01000018 384 0
JFLC01000232 384 0
JFLC01000203 382 0
JFLC01000194 381 0
JFLC01000205 379 0
JFLC01000207 376 0
JFLC01000226 373 0
JFLC01000221 373 0
JFLC01000273 371 0
JFLC01000078 370 0
JFLC01000103 368 0
JFLC01000224 368 0
JFLC01000012 367 0
JFLC01000234 366 0
JFLC01000158 365 0
JFLC01000050 363 0
JFLC01000322 359 0
JFLC01000256 358 0
JFLC01000320 352 0
JFLC01000179 350 0
JFLC01000201 350 0
JFLC01000215 349 0
JFLC01000014 346 0
JFLC01000072 346 0
JFLC01000102 344 0
JFLC01000098 343 0
JFLC01000076 339 0
JFLC01000044 338 0
JFLC01000079 335 0
JFLC01000063 334 0
JFLC01000324 333 0
JFLC01000129 332 0
JFLC01000013 325 0
JFLC01000308 324 0
JFLC01000219 322 0
JFLC01000007 321 0
JFLC01000242 321 0
JFLC01000191 320 0
JFLC01000111 319 0
JFLC01000100 317 0
JFLC01000070 316 0
JFLC01000274 316 0
JFLC01000042 311 0
JFLC01000024 311 0
JFLC01000259 309 0
JFLC01000144 308 0
JFLC01000316 305 0
JFLC01000068 304 0
JFLC01000057 303 0
JFLC01000049 302 0
JFLC01000168 299 0
JFLC01000059 299 0
JFLC01000017 299 0
JFLC01000060 295 0
JFLC01000131 293 0
JFLC01000313 290 0
JFLC01000291 290 0
JFLC01000045 288 0
JFLC01000176 288 0
JFLC01000145 286 0
JFLC01000284 286 0
JFLC01000260 283 0
JFLC01000211 282 0
JFLC01000110 280 0
JFLC01000239 279 0
JFLC01000048 278 0
JFLC01000240 277 0
JFLC01000058 277 0
JFLC01000189 277 0
JFLC01000062 274 0
JFLC01000193 273 0
JFLC01000025 270 0
JFLC01000243 269 0
JFLC01000067 269 0
JFLC01000108 266 0
JFLC01000061 263 0
JFLC01000197 263 0
JFLC01000009 259 0
JFLC01000125 258 0
JFLC01000180 257 0
JFLC01000249 255 0
JFLC01000302 247 0
JFLC01000093 246 0
JFLC01000073 245 0
JFLC01000175 245 0
JFLC01000245 244 0
JFLC01000074 243 0
JFLC01000011 242 0
JFLC01000124 242 0
JFLC01000130 240 0
JFLC01000257 239 0
JFLC01000319 238 0
JFLC01000261 238 0
JFLC01000278 237 0
JFLC01000126 237 0
JFLC01000178 235 0
JFLC01000263 235 0
JFLC01000312 235 0
JFLC01000117 234 0
JFLC01000237 233 0
JFLC01000167 232 0
JFLC01000292 232 0
JFLC01000064 231 0
JFLC01000285 229 0
JFLC01000065 229 0
JFLC01000121 227 0
JFLC01000008 226 0
JFLC01000310 226 0
JFLC01000081 226 0
JFLC01000287 224 0
JFLC01000136 224 0
JFLC01000101 223 0
JFLC01000289 222 0
JFLC01000122 221 0
JFLC01000071 220 0
JFLC01000294 220 0
JFLC01000296 219 0
JFLC01000321 219 0
JFLC01000107 219 0
JFLC01000196 219 0
JFLC01000309 218 0
JFLC01000172 217 0
JFLC01000140 217 0
JFLC01000283 217 0
JFLC01000010 216 0
JFLC01000220 216 0
JFLC01000026 215 0
JFLC01000016 215 0
JFLC01000241 214 0
JFLC01000238 214 0
JFLC01000190 213 0
JFLC01000127 212 0
JFLC01000128 211 0
JFLC01000113 210 0
JFLC01000290 210 0
JFLC01000305 209 0
JFLC01000282 209 0
JFLC01000295 208 0
JFLC01000288 205 0
JFLC01000046 203 0
JFLC01000047 203 0
JFLC01000170 203 0
JFLC01000293 201 0
JFLC01000286 200 0
JFLC01000217 200 0
Total 1,464,890 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000635375.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000635375.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000635375.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000635375.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635375.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635375.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635375.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635375.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635375.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635375.1/genes/interpro.txt (File format)

MicrobeBase