cyanobase » Prochlorococcus sp. scB241_527L22

Prochlorococcus sp. scB241_527L22

Summary

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Data source name GCA_000635355.1
Full name Prochlorococcus sp. scB241_527L22 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLA01000031 336,880 0
JFLA01000002 240,033 0
JFLA01000167 156,591 0
JFLA01000168 92,456 0
JFLA01000135 81,180 0
JFLA01000151 58,488 0
JFLA01000134 53,906 0
JFLA01000029 47,489 0
JFLA01000066 46,665 0
JFLA01000152 42,181 0
JFLA01000028 33,606 0
JFLA01000163 30,377 0
JFLA01000137 29,960 0
JFLA01000161 28,675 0
JFLA01000032 24,448 0
JFLA01000003 18,510 0
JFLA01000030 13,348 0
JFLA01000027 13,104 0
JFLA01000165 11,524 0
JFLA01000162 8,153 0
JFLA01000150 7,443 0
JFLA01000054 7,194 0
JFLA01000128 6,505 0
JFLA01000084 5,193 0
JFLA01000164 4,360 0
JFLA01000127 4,049 0
JFLA01000034 3,821 0
JFLA01000166 3,410 0
JFLA01000125 3,363 0
JFLA01000132 3,247 0
JFLA01000035 2,926 0
JFLA01000074 2,622 0
JFLA01000075 2,561 0
JFLA01000067 2,464 0
JFLA01000160 2,270 0
JFLA01000147 2,265 0
JFLA01000131 2,076 0
JFLA01000149 2,065 0
JFLA01000126 2,009 0
JFLA01000068 1,956 0
JFLA01000129 1,794 0
JFLA01000079 1,760 0
JFLA01000124 1,720 0
JFLA01000025 1,655 0
JFLA01000196 1,505 0
JFLA01000033 1,487 0
JFLA01000192 1,414 0
JFLA01000111 1,404 0
JFLA01000052 1,308 0
JFLA01000145 1,174 0
JFLA01000082 1,119 0
JFLA01000130 1,064 0
JFLA01000083 1,034 0
JFLA01000185 1,032 0
JFLA01000039 1,028 0
JFLA01000053 918 0
JFLA01000076 879 0
JFLA01000157 867 0
JFLA01000078 810 0
JFLA01000089 801 0
JFLA01000136 798 0
JFLA01000023 783 0
JFLA01000085 767 0
JFLA01000194 760 0
JFLA01000071 753 0
JFLA01000088 722 0
JFLA01000080 721 0
JFLA01000159 718 0
JFLA01000021 703 0
JFLA01000204 681 0
JFLA01000108 677 0
JFLA01000072 653 0
JFLA01000051 651 0
JFLA01000203 624 0
JFLA01000180 622 0
JFLA01000058 605 0
JFLA01000069 604 0
JFLA01000183 600 0
JFLA01000087 588 0
JFLA01000019 574 0
JFLA01000169 566 0
JFLA01000197 563 0
JFLA01000139 555 0
JFLA01000205 554 0
JFLA01000182 546 0
JFLA01000142 534 0
JFLA01000063 521 0
JFLA01000077 520 0
JFLA01000090 512 0
JFLA01000001 511 0
JFLA01000064 482 0
JFLA01000187 480 0
JFLA01000198 473 0
JFLA01000026 466 0
JFLA01000049 465 0
JFLA01000172 459 0
JFLA01000181 458 0
JFLA01000061 456 0
JFLA01000086 454 0
JFLA01000070 452 0
JFLA01000099 447 0
JFLA01000065 440 0
JFLA01000106 435 0
JFLA01000091 426 0
JFLA01000188 424 0
JFLA01000140 423 0
JFLA01000193 390 0
JFLA01000059 388 0
JFLA01000143 388 0
JFLA01000012 386 0
JFLA01000008 382 0
JFLA01000060 381 0
JFLA01000156 380 0
JFLA01000093 380 0
JFLA01000048 370 0
JFLA01000206 367 0
JFLA01000170 366 0
JFLA01000038 362 0
JFLA01000199 360 0
JFLA01000037 355 0
JFLA01000148 355 0
JFLA01000174 353 0
JFLA01000146 342 0
JFLA01000015 341 0
JFLA01000107 340 0
JFLA01000042 334 0
JFLA01000006 330 0
JFLA01000117 311 0
JFLA01000101 310 0
JFLA01000154 302 0
JFLA01000055 301 0
JFLA01000201 299 0
JFLA01000202 299 0
JFLA01000014 293 0
JFLA01000050 292 0
JFLA01000096 287 0
JFLA01000184 286 0
JFLA01000138 286 0
JFLA01000045 286 0
JFLA01000073 284 0
JFLA01000098 282 0
JFLA01000092 282 0
JFLA01000020 282 0
JFLA01000009 281 0
JFLA01000121 281 0
JFLA01000175 281 0
JFLA01000040 281 0
JFLA01000118 278 0
JFLA01000119 274 0
JFLA01000133 273 0
JFLA01000186 272 0
JFLA01000097 271 0
JFLA01000144 271 0
JFLA01000123 269 0
JFLA01000109 269 0
JFLA01000178 268 0
JFLA01000016 267 0
JFLA01000176 263 0
JFLA01000155 260 0
JFLA01000191 260 0
JFLA01000114 257 0
JFLA01000022 257 0
JFLA01000095 256 0
JFLA01000158 256 0
JFLA01000011 255 0
JFLA01000043 254 0
JFLA01000179 251 0
JFLA01000112 249 0
JFLA01000116 246 0
JFLA01000056 245 0
JFLA01000113 237 0
JFLA01000173 237 0
JFLA01000094 237 0
JFLA01000044 235 0
JFLA01000005 233 0
JFLA01000195 230 0
JFLA01000105 230 0
JFLA01000081 229 0
JFLA01000047 229 0
JFLA01000036 228 0
JFLA01000007 225 0
JFLA01000102 225 0
JFLA01000041 224 0
JFLA01000190 224 0
JFLA01000141 223 0
JFLA01000153 222 0
JFLA01000057 221 0
JFLA01000024 221 0
JFLA01000018 219 0
JFLA01000189 219 0
JFLA01000177 218 0
JFLA01000104 218 0
JFLA01000120 215 0
JFLA01000110 213 0
JFLA01000115 213 0
JFLA01000171 210 0
JFLA01000122 209 0
JFLA01000017 209 0
JFLA01000013 209 0
JFLA01000100 209 0
JFLA01000046 208 0
JFLA01000200 206 0
JFLA01000004 205 0
JFLA01000103 205 0
JFLA01000010 201 0
JFLA01000062 200 0
Total 1,517,745 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635355.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635355.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635355.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635355.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635355.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635355.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635355.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635355.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635355.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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