cyanobase » Prochlorococcus sp. scB241_527L16

Prochlorococcus sp. scB241_527L16

Summary

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Data source name GCA_000635335.1
Full name Prochlorococcus sp. scB241_527L16 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKZ01000147 129,399 0
JFKZ01000090 127,571 0
JFKZ01000132 91,773 0
JFKZ01000070 85,759 0
JFKZ01000003 72,497 0
JFKZ01000143 66,889 0
JFKZ01000071 50,557 0
JFKZ01000141 48,678 0
JFKZ01000131 28,669 0
JFKZ01000151 28,158 0
JFKZ01000095 22,780 0
JFKZ01000172 17,202 0
JFKZ01000171 16,236 0
JFKZ01000170 15,127 0
JFKZ01000142 11,922 0
JFKZ01000001 11,307 0
JFKZ01000150 7,665 0
JFKZ01000020 5,793 0
JFKZ01000091 5,374 0
JFKZ01000015 4,595 0
JFKZ01000031 4,526 0
JFKZ01000182 4,433 0
JFKZ01000086 4,377 0
JFKZ01000014 4,330 0
JFKZ01000069 3,773 0
JFKZ01000002 3,590 0
JFKZ01000083 3,439 0
JFKZ01000033 3,348 0
JFKZ01000013 3,276 0
JFKZ01000035 3,200 0
JFKZ01000101 2,773 0
JFKZ01000081 2,652 0
JFKZ01000016 2,502 0
JFKZ01000088 2,258 0
JFKZ01000169 2,091 0
JFKZ01000017 2,051 0
JFKZ01000089 1,950 0
JFKZ01000148 1,905 0
JFKZ01000066 1,801 0
JFKZ01000099 1,563 0
JFKZ01000047 1,428 0
JFKZ01000183 1,376 0
JFKZ01000018 1,301 0
JFKZ01000139 1,273 0
JFKZ01000061 1,261 0
JFKZ01000096 1,260 0
JFKZ01000098 1,222 0
JFKZ01000082 1,174 0
JFKZ01000034 1,108 0
JFKZ01000115 1,085 0
JFKZ01000146 1,046 0
JFKZ01000024 973 0
JFKZ01000079 968 0
JFKZ01000022 965 0
JFKZ01000130 943 0
JFKZ01000126 879 0
JFKZ01000110 837 0
JFKZ01000057 828 0
JFKZ01000046 791 0
JFKZ01000173 769 0
JFKZ01000117 759 0
JFKZ01000036 733 0
JFKZ01000021 702 0
JFKZ01000175 683 0
JFKZ01000072 664 0
JFKZ01000007 659 0
JFKZ01000032 648 0
JFKZ01000085 643 0
JFKZ01000107 638 0
JFKZ01000111 629 0
JFKZ01000119 627 0
JFKZ01000176 623 0
JFKZ01000180 621 0
JFKZ01000094 614 0
JFKZ01000050 613 0
JFKZ01000121 611 0
JFKZ01000167 600 0
JFKZ01000037 581 0
JFKZ01000160 578 0
JFKZ01000123 561 0
JFKZ01000161 553 0
JFKZ01000138 543 0
JFKZ01000165 539 0
JFKZ01000030 539 0
JFKZ01000093 537 0
JFKZ01000006 534 0
JFKZ01000076 521 0
JFKZ01000042 520 0
JFKZ01000029 516 0
JFKZ01000041 513 0
JFKZ01000044 512 0
JFKZ01000039 512 0
JFKZ01000045 507 0
JFKZ01000060 499 0
JFKZ01000113 489 0
JFKZ01000052 488 0
JFKZ01000028 474 0
JFKZ01000068 465 0
JFKZ01000005 462 0
JFKZ01000112 462 0
JFKZ01000023 461 0
JFKZ01000104 452 0
JFKZ01000097 446 0
JFKZ01000158 439 0
JFKZ01000084 432 0
JFKZ01000120 430 0
JFKZ01000063 429 0
JFKZ01000092 424 0
JFKZ01000051 411 0
JFKZ01000125 404 0
JFKZ01000054 395 0
JFKZ01000080 391 0
JFKZ01000135 388 0
JFKZ01000056 375 0
JFKZ01000140 375 0
JFKZ01000025 371 0
JFKZ01000058 369 0
JFKZ01000164 369 0
JFKZ01000178 368 0
JFKZ01000124 368 0
JFKZ01000067 367 0
JFKZ01000105 366 0
JFKZ01000103 365 0
JFKZ01000137 359 0
JFKZ01000109 355 0
JFKZ01000008 354 0
JFKZ01000127 346 0
JFKZ01000129 339 0
JFKZ01000181 339 0
JFKZ01000019 339 0
JFKZ01000043 328 0
JFKZ01000073 309 0
JFKZ01000128 299 0
JFKZ01000144 295 0
JFKZ01000087 293 0
JFKZ01000077 292 0
JFKZ01000152 290 0
JFKZ01000163 288 0
JFKZ01000100 278 0
JFKZ01000064 275 0
JFKZ01000062 274 0
JFKZ01000114 274 0
JFKZ01000122 272 0
JFKZ01000078 272 0
JFKZ01000012 271 0
JFKZ01000145 270 0
JFKZ01000154 266 0
JFKZ01000155 264 0
JFKZ01000168 264 0
JFKZ01000159 264 0
JFKZ01000153 263 0
JFKZ01000009 259 0
JFKZ01000048 259 0
JFKZ01000074 255 0
JFKZ01000166 254 0
JFKZ01000059 252 0
JFKZ01000102 251 0
JFKZ01000027 251 0
JFKZ01000040 250 0
JFKZ01000118 249 0
JFKZ01000106 246 0
JFKZ01000116 245 0
JFKZ01000108 244 0
JFKZ01000136 242 0
JFKZ01000156 240 0
JFKZ01000038 239 0
JFKZ01000149 238 0
JFKZ01000004 237 0
JFKZ01000075 237 0
JFKZ01000049 230 0
JFKZ01000053 226 0
JFKZ01000174 225 0
JFKZ01000065 221 0
JFKZ01000133 219 0
JFKZ01000177 219 0
JFKZ01000010 214 0
JFKZ01000026 214 0
JFKZ01000055 211 0
JFKZ01000011 205 0
JFKZ01000162 203 0
JFKZ01000134 201 0
JFKZ01000179 200 0
JFKZ01000157 180 0
Total 977,191 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635335.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635335.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635335.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635335.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635335.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635335.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635335.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635335.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635335.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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