cyanobase » Prochlorococcus sp. scB241_527I9

Prochlorococcus sp. scB241_527I9

Summary

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Data source name GCA_000635315.1
Full name Prochlorococcus sp. scB241_527I9 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKX01000149 187,263 0
JFKX01000146 134,215 0
JFKX01000073 91,037 0
JFKX01000059 89,212 0
JFKX01000079 83,546 0
JFKX01000080 82,556 0
JFKX01000088 71,721 0
JFKX01000077 54,165 0
JFKX01000087 39,636 0
JFKX01000013 39,350 0
JFKX01000045 36,826 0
JFKX01000135 30,008 0
JFKX01000136 26,507 0
JFKX01000072 17,328 0
JFKX01000118 15,052 0
JFKX01000074 9,463 0
JFKX01000090 9,398 0
JFKX01000095 8,830 0
JFKX01000001 8,338 0
JFKX01000078 8,138 0
JFKX01000098 7,721 0
JFKX01000076 7,527 0
JFKX01000121 6,414 0
JFKX01000047 5,305 0
JFKX01000150 5,259 0
JFKX01000086 4,853 0
JFKX01000093 3,764 0
JFKX01000014 3,426 0
JFKX01000120 3,186 0
JFKX01000044 3,000 0
JFKX01000145 2,643 0
JFKX01000066 1,760 0
JFKX01000091 1,626 0
JFKX01000097 1,543 0
JFKX01000075 1,365 0
JFKX01000147 1,361 0
JFKX01000064 1,351 0
JFKX01000122 1,335 0
JFKX01000144 1,304 0
JFKX01000035 1,114 0
JFKX01000015 935 0
JFKX01000067 927 0
JFKX01000060 858 0
JFKX01000130 820 0
JFKX01000125 708 0
JFKX01000100 645 0
JFKX01000071 631 0
JFKX01000096 608 0
JFKX01000116 594 0
JFKX01000054 580 0
JFKX01000111 561 0
JFKX01000065 510 0
JFKX01000140 500 0
JFKX01000134 496 0
JFKX01000056 494 0
JFKX01000117 493 0
JFKX01000115 464 0
JFKX01000132 450 0
JFKX01000012 446 0
JFKX01000124 446 0
JFKX01000063 433 0
JFKX01000029 422 0
JFKX01000027 396 0
JFKX01000036 389 0
JFKX01000030 382 0
JFKX01000085 381 0
JFKX01000046 379 0
JFKX01000004 373 0
JFKX01000099 363 0
JFKX01000039 361 0
JFKX01000011 354 0
JFKX01000083 354 0
JFKX01000021 353 0
JFKX01000114 352 0
JFKX01000069 351 0
JFKX01000126 351 0
JFKX01000032 349 0
JFKX01000092 346 0
JFKX01000137 344 0
JFKX01000018 339 0
JFKX01000119 330 0
JFKX01000006 328 0
JFKX01000053 325 0
JFKX01000040 323 0
JFKX01000141 320 0
JFKX01000081 320 0
JFKX01000033 317 0
JFKX01000154 317 0
JFKX01000068 315 0
JFKX01000131 309 0
JFKX01000102 309 0
JFKX01000155 305 0
JFKX01000153 305 0
JFKX01000034 302 0
JFKX01000050 302 0
JFKX01000024 302 0
JFKX01000112 299 0
JFKX01000070 297 0
JFKX01000107 296 0
JFKX01000049 293 0
JFKX01000127 292 0
JFKX01000105 289 0
JFKX01000123 287 0
JFKX01000151 285 0
JFKX01000017 284 0
JFKX01000148 283 0
JFKX01000101 278 0
JFKX01000157 273 0
JFKX01000031 272 0
JFKX01000005 270 0
JFKX01000094 268 0
JFKX01000106 267 0
JFKX01000002 261 0
JFKX01000113 260 0
JFKX01000142 260 0
JFKX01000058 256 0
JFKX01000009 256 0
JFKX01000028 256 0
JFKX01000084 254 0
JFKX01000156 250 0
JFKX01000110 245 0
JFKX01000020 244 0
JFKX01000007 244 0
JFKX01000055 243 0
JFKX01000138 241 0
JFKX01000082 240 0
JFKX01000010 238 0
JFKX01000128 237 0
JFKX01000104 237 0
JFKX01000048 237 0
JFKX01000158 235 0
JFKX01000139 235 0
JFKX01000109 232 0
JFKX01000103 232 0
JFKX01000025 226 0
JFKX01000037 226 0
JFKX01000016 224 0
JFKX01000108 224 0
JFKX01000062 223 0
JFKX01000159 223 0
JFKX01000026 221 0
JFKX01000023 220 0
JFKX01000129 220 0
JFKX01000003 219 0
JFKX01000038 218 0
JFKX01000041 217 0
JFKX01000152 216 0
JFKX01000061 214 0
JFKX01000019 214 0
JFKX01000043 210 0
JFKX01000089 209 0
JFKX01000022 206 0
JFKX01000052 204 0
JFKX01000057 204 0
JFKX01000008 203 0
JFKX01000133 203 0
JFKX01000051 203 0
JFKX01000143 203 0
JFKX01000042 202 0
Total 1,148,291 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635315.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635315.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635315.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635315.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635315.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635315.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635315.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635315.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635315.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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