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cyanobase » Prochlorococcus sp. scB241_527G5

Prochlorococcus sp. scB241_527G5

Summary

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Data source name GCA_000635295.1
Full name Prochlorococcus sp. scB241_527G5
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKW01000256 133,272 0
JFKW01000021 120,045 0
JFKW01000313 114,389 0
JFKW01000223 104,138 0
JFKW01000312 89,141 0
JFKW01000455 72,752 0
JFKW01000291 33,027 0
JFKW01000255 29,660 0
JFKW01000342 24,942 0
JFKW01000471 20,139 0
JFKW01000254 15,303 0
JFKW01000257 15,075 0
JFKW01000345 14,661 0
JFKW01000343 14,313 0
JFKW01000224 12,013 0
JFKW01000089 10,278 0
JFKW01000360 10,129 0
JFKW01000309 9,720 0
JFKW01000310 8,766 0
JFKW01000258 8,442 0
JFKW01000088 8,013 0
JFKW01000361 7,780 0
JFKW01000250 6,549 0
JFKW01000248 6,506 0
JFKW01000306 6,110 0
JFKW01000109 5,462 0
JFKW01000344 5,054 0
JFKW01000290 4,756 0
JFKW01000022 4,519 0
JFKW01000293 4,475 0
JFKW01000144 4,170 0
JFKW01000311 3,722 0
JFKW01000080 3,494 0
JFKW01000029 3,065 0
JFKW01000147 3,026 0
JFKW01000073 2,806 0
JFKW01000235 2,712 0
JFKW01000079 2,699 0
JFKW01000419 2,617 0
JFKW01000307 2,495 0
JFKW01000031 2,424 0
JFKW01000292 2,409 0
JFKW01000085 2,263 0
JFKW01000017 2,240 0
JFKW01000234 2,230 0
JFKW01000242 1,982 0
JFKW01000237 1,914 0
JFKW01000149 1,877 0
JFKW01000305 1,836 0
JFKW01000298 1,832 0
JFKW01000102 1,787 0
JFKW01000104 1,761 0
JFKW01000030 1,689 0
JFKW01000024 1,656 0
JFKW01000346 1,613 0
JFKW01000420 1,502 0
JFKW01000251 1,486 0
JFKW01000459 1,459 0
JFKW01000302 1,432 0
JFKW01000197 1,384 0
JFKW01000198 1,377 0
JFKW01000230 1,368 0
JFKW01000071 1,351 0
JFKW01000113 1,344 0
JFKW01000470 1,311 0
JFKW01000148 1,311 0
JFKW01000087 1,264 0
JFKW01000421 1,232 0
JFKW01000023 1,227 0
JFKW01000145 1,214 0
JFKW01000236 1,196 0
JFKW01000081 1,178 0
JFKW01000314 1,125 0
JFKW01000246 1,111 0
JFKW01000373 1,082 0
JFKW01000077 1,079 0
JFKW01000362 1,056 0
JFKW01000233 1,053 0
JFKW01000099 1,045 0
JFKW01000454 1,040 0
JFKW01000068 1,037 0
JFKW01000075 1,022 0
JFKW01000101 999 0
JFKW01000417 981 0
JFKW01000359 971 0
JFKW01000337 954 0
JFKW01000105 953 0
JFKW01000114 942 0
JFKW01000245 931 0
JFKW01000449 917 0
JFKW01000016 917 0
JFKW01000395 902 0
JFKW01000375 888 0
JFKW01000094 880 0
JFKW01000143 873 0
JFKW01000098 871 0
JFKW01000353 864 0
JFKW01000416 859 0
JFKW01000082 857 0
JFKW01000196 855 0
JFKW01000329 832 0
JFKW01000318 831 0
JFKW01000249 830 0
JFKW01000438 827 0
JFKW01000083 813 0
JFKW01000014 805 0
JFKW01000288 805 0
JFKW01000443 802 0
JFKW01000394 797 0
JFKW01000393 786 0
JFKW01000139 784 0
JFKW01000304 778 0
JFKW01000461 766 0
JFKW01000155 752 0
JFKW01000173 745 0
JFKW01000412 732 0
JFKW01000374 730 0
JFKW01000367 723 0
JFKW01000150 718 0
JFKW01000326 716 0
JFKW01000054 714 0
JFKW01000061 703 0
JFKW01000303 684 0
JFKW01000276 683 0
JFKW01000348 681 0
JFKW01000301 680 0
JFKW01000019 679 0
JFKW01000281 677 0
JFKW01000130 672 0
JFKW01000117 671 0
JFKW01000275 667 0
JFKW01000347 659 0
JFKW01000137 652 0
JFKW01000271 650 0
JFKW01000268 627 0
JFKW01000355 626 0
JFKW01000055 626 0
JFKW01000457 625 0
JFKW01000317 624 0
JFKW01000244 623 0
JFKW01000201 617 0
JFKW01000325 614 0
JFKW01000380 605 0
JFKW01000463 605 0
JFKW01000464 602 0
JFKW01000027 595 0
JFKW01000151 594 0
JFKW01000379 592 0
JFKW01000035 592 0
JFKW01000168 584 0
JFKW01000018 581 0
JFKW01000341 580 0
JFKW01000157 577 0
JFKW01000092 574 0
JFKW01000252 574 0
JFKW01000300 568 0
JFKW01000219 568 0
JFKW01000189 567 0
JFKW01000330 557 0
JFKW01000378 554 0
JFKW01000444 551 0
JFKW01000036 550 0
JFKW01000188 544 0
JFKW01000396 543 0
JFKW01000425 542 0
JFKW01000225 539 0
JFKW01000069 535 0
JFKW01000386 521 0
JFKW01000324 514 0
JFKW01000107 513 0
JFKW01000240 512 0
JFKW01000116 509 0
JFKW01000424 507 0
JFKW01000076 503 0
JFKW01000243 502 0
JFKW01000111 502 0
JFKW01000152 501 0
JFKW01000460 499 0
JFKW01000279 498 0
JFKW01000358 496 0
JFKW01000384 490 0
JFKW01000392 489 0
JFKW01000229 488 0
JFKW01000439 484 0
JFKW01000336 484 0
JFKW01000207 483 0
JFKW01000028 483 0
JFKW01000171 483 0
JFKW01000066 482 0
JFKW01000423 480 0
JFKW01000110 478 0
JFKW01000183 478 0
JFKW01000058 475 0
JFKW01000383 471 0
JFKW01000138 471 0
JFKW01000121 470 0
JFKW01000265 468 0
JFKW01000272 467 0
JFKW01000388 465 0
JFKW01000217 463 0
JFKW01000091 461 0
JFKW01000372 460 0
JFKW01000239 460 0
JFKW01000095 459 0
JFKW01000181 459 0
JFKW01000163 454 0
JFKW01000132 452 0
JFKW01000289 444 0
JFKW01000064 443 0
JFKW01000057 442 0
JFKW01000078 441 0
JFKW01000141 440 0
JFKW01000354 438 0
JFKW01000106 436 0
JFKW01000398 435 0
JFKW01000010 434 0
JFKW01000448 432 0
JFKW01000366 430 0
JFKW01000072 428 0
JFKW01000199 425 0
JFKW01000465 425 0
JFKW01000060 423 0
JFKW01000440 422 0
JFKW01000397 416 0
JFKW01000128 415 0
JFKW01000032 412 0
JFKW01000129 409 0
JFKW01000411 409 0
JFKW01000299 408 0
JFKW01000006 407 0
JFKW01000191 407 0
JFKW01000172 407 0
JFKW01000368 404 0
JFKW01000260 404 0
JFKW01000401 400 0
JFKW01000046 399 0
JFKW01000153 397 0
JFKW01000352 395 0
JFKW01000263 395 0
JFKW01000441 391 0
JFKW01000226 390 0
JFKW01000015 389 0
JFKW01000385 388 0
JFKW01000070 388 0
JFKW01000227 386 0
JFKW01000195 384 0
JFKW01000220 384 0
JFKW01000025 384 0
JFKW01000332 382 0
JFKW01000065 379 0
JFKW01000295 379 0
JFKW01000259 377 0
JFKW01000323 375 0
JFKW01000187 374 0
JFKW01000238 370 0
JFKW01000418 367 0
JFKW01000215 367 0
JFKW01000278 366 0
JFKW01000468 365 0
JFKW01000136 361 0
JFKW01000247 361 0
JFKW01000403 359 0
JFKW01000399 356 0
JFKW01000213 355 0
JFKW01000049 354 0
JFKW01000194 353 0
JFKW01000261 352 0
JFKW01000084 351 0
JFKW01000447 351 0
JFKW01000445 350 0
JFKW01000170 350 0
JFKW01000122 347 0
JFKW01000414 347 0
JFKW01000267 347 0
JFKW01000158 346 0
JFKW01000280 346 0
JFKW01000405 346 0
JFKW01000053 345 0
JFKW01000333 344 0
JFKW01000005 343 0
JFKW01000327 343 0
JFKW01000011 343 0
JFKW01000231 342 0
JFKW01000370 342 0
JFKW01000192 341 0
JFKW01000209 336 0
JFKW01000218 334 0
JFKW01000208 334 0
JFKW01000466 334 0
JFKW01000430 333 0
JFKW01000166 333 0
JFKW01000205 331 0
JFKW01000180 330 0
JFKW01000429 329 0
JFKW01000334 327 0
JFKW01000285 327 0
JFKW01000357 326 0
JFKW01000450 326 0
JFKW01000120 325 0
JFKW01000174 324 0
JFKW01000050 323 0
JFKW01000462 323 0
JFKW01000427 321 0
JFKW01000451 317 0
JFKW01000364 315 0
JFKW01000266 313 0
JFKW01000377 312 0
JFKW01000222 312 0
JFKW01000467 310 0
JFKW01000182 308 0
JFKW01000216 307 0
JFKW01000340 304 0
JFKW01000431 304 0
JFKW01000190 303 0
JFKW01000160 302 0
JFKW01000026 302 0
JFKW01000039 300 0
JFKW01000112 299 0
JFKW01000351 298 0
JFKW01000458 296 0
JFKW01000074 295 0
JFKW01000308 295 0
JFKW01000118 295 0
JFKW01000391 294 0
JFKW01000212 294 0
JFKW01000316 294 0
JFKW01000176 293 0
JFKW01000184 289 0
JFKW01000270 287 0
JFKW01000446 286 0
JFKW01000296 285 0
JFKW01000409 285 0
JFKW01000432 285 0
JFKW01000282 285 0
JFKW01000140 283 0
JFKW01000322 283 0
JFKW01000206 282 0
JFKW01000434 282 0
JFKW01000086 281 0
JFKW01000119 281 0
JFKW01000390 281 0
JFKW01000241 279 0
JFKW01000126 279 0
JFKW01000413 278 0
JFKW01000204 277 0
JFKW01000056 274 0
JFKW01000008 274 0
JFKW01000004 274 0
JFKW01000051 274 0
JFKW01000131 273 0
JFKW01000134 273 0
JFKW01000146 273 0
JFKW01000012 273 0
JFKW01000253 272 0
JFKW01000003 271 0
JFKW01000264 270 0
JFKW01000426 269 0
JFKW01000331 265 0
JFKW01000469 265 0
JFKW01000452 265 0
JFKW01000232 265 0
JFKW01000211 264 0
JFKW01000338 263 0
JFKW01000044 262 0
JFKW01000286 261 0
JFKW01000177 261 0
JFKW01000123 260 0
JFKW01000167 259 0
JFKW01000410 258 0
JFKW01000442 258 0
JFKW01000371 258 0
JFKW01000365 257 0
JFKW01000002 254 0
JFKW01000093 254 0
JFKW01000040 254 0
JFKW01000159 252 0
JFKW01000047 252 0
JFKW01000433 251 0
JFKW01000178 250 0
JFKW01000453 250 0
JFKW01000127 249 0
JFKW01000363 248 0
JFKW01000193 247 0
JFKW01000435 247 0
JFKW01000339 246 0
JFKW01000042 245 0
JFKW01000062 245 0
JFKW01000037 243 0
JFKW01000284 243 0
JFKW01000096 243 0
JFKW01000369 243 0
JFKW01000041 242 0
JFKW01000048 242 0
JFKW01000142 241 0
JFKW01000090 241 0
JFKW01000387 240 0
JFKW01000175 240 0
JFKW01000406 238 0
JFKW01000294 238 0
JFKW01000402 237 0
JFKW01000156 236 0
JFKW01000059 236 0
JFKW01000007 235 0
JFKW01000033 235 0
JFKW01000389 233 0
JFKW01000200 233 0
JFKW01000349 233 0
JFKW01000320 232 0
JFKW01000013 231 0
JFKW01000315 231 0
JFKW01000287 231 0
JFKW01000214 230 0
JFKW01000038 230 0
JFKW01000115 229 0
JFKW01000319 228 0
JFKW01000124 228 0
JFKW01000262 228 0
JFKW01000269 228 0
JFKW01000228 224 0
JFKW01000382 224 0
JFKW01000221 223 0
JFKW01000283 223 0
JFKW01000203 222 0
JFKW01000400 220 0
JFKW01000415 220 0
JFKW01000165 219 0
JFKW01000404 219 0
JFKW01000097 218 0
JFKW01000043 218 0
JFKW01000067 217 0
JFKW01000108 217 0
JFKW01000052 216 0
JFKW01000407 216 0
JFKW01000321 216 0
JFKW01000161 215 0
JFKW01000210 214 0
JFKW01000125 214 0
JFKW01000179 213 0
JFKW01000273 213 0
JFKW01000408 212 0
JFKW01000356 212 0
JFKW01000164 212 0
JFKW01000350 211 0
JFKW01000186 211 0
JFKW01000335 210 0
JFKW01000133 210 0
JFKW01000328 210 0
JFKW01000162 209 0
JFKW01000009 209 0
JFKW01000428 209 0
JFKW01000185 208 0
JFKW01000001 208 0
JFKW01000045 207 0
JFKW01000100 206 0
JFKW01000202 205 0
JFKW01000436 205 0
JFKW01000381 205 0
JFKW01000376 204 0
JFKW01000437 204 0
JFKW01000103 203 0
JFKW01000297 203 0
JFKW01000135 203 0
JFKW01000456 202 0
JFKW01000034 202 0
JFKW01000277 202 0
JFKW01000169 202 0
JFKW01000154 202 0
JFKW01000020 201 0
JFKW01000422 201 0
JFKW01000274 200 0
JFKW01000063 200 0
Total 1,170,831 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000635295.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000635295.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000635295.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000635295.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635295.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635295.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635295.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635295.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635295.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635295.1/genes/interpro.txt (File format)

MicrobeBase