cyanobase » Prochlorococcus sp. scB245a_521O20

Prochlorococcus sp. scB245a_521O20

Summary

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Data source name GCA_000635255.1
Full name Prochlorococcus sp. scB245a_521O20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFOD01000068 366,802 0
JFOD01000001 292,342 0
JFOD01000121 211,521 0
JFOD01000093 130,292 0
JFOD01000092 87,841 0
JFOD01000110 64,741 0
JFOD01000081 63,941 0
JFOD01000109 54,704 0
JFOD01000069 40,324 0
JFOD01000082 25,513 0
JFOD01000067 19,316 0
JFOD01000138 11,997 0
JFOD01000111 9,088 0
JFOD01000031 8,078 0
JFOD01000083 8,078 0
JFOD01000112 8,033 0
JFOD01000120 7,938 0
JFOD01000123 6,960 0
JFOD01000108 6,221 0
JFOD01000085 5,529 0
JFOD01000019 5,386 0
JFOD01000030 4,770 0
JFOD01000064 4,495 0
JFOD01000130 3,812 0
JFOD01000029 2,502 0
JFOD01000133 2,279 0
JFOD01000100 2,236 0
JFOD01000073 2,205 0
JFOD01000002 2,125 0
JFOD01000033 2,091 0
JFOD01000132 2,007 0
JFOD01000017 1,870 0
JFOD01000065 1,545 0
JFOD01000027 1,487 0
JFOD01000061 1,266 0
JFOD01000039 1,149 0
JFOD01000018 1,093 0
JFOD01000131 1,077 0
JFOD01000026 1,074 0
JFOD01000041 1,071 0
JFOD01000102 1,066 0
JFOD01000023 1,063 0
JFOD01000139 960 0
JFOD01000122 948 0
JFOD01000080 928 0
JFOD01000104 837 0
JFOD01000013 826 0
JFOD01000088 782 0
JFOD01000025 737 0
JFOD01000078 698 0
JFOD01000038 672 0
JFOD01000091 672 0
JFOD01000055 644 0
JFOD01000136 635 0
JFOD01000006 605 0
JFOD01000114 600 0
JFOD01000077 591 0
JFOD01000011 565 0
JFOD01000016 563 0
JFOD01000135 555 0
JFOD01000015 554 0
JFOD01000054 545 0
JFOD01000042 539 0
JFOD01000098 538 0
JFOD01000009 536 0
JFOD01000044 530 0
JFOD01000128 526 0
JFOD01000059 526 0
JFOD01000084 506 0
JFOD01000071 500 0
JFOD01000090 498 0
JFOD01000134 488 0
JFOD01000101 480 0
JFOD01000079 463 0
JFOD01000032 460 0
JFOD01000049 431 0
JFOD01000124 422 0
JFOD01000058 422 0
JFOD01000052 416 0
JFOD01000086 412 0
JFOD01000072 410 0
JFOD01000004 408 0
JFOD01000125 407 0
JFOD01000047 398 0
JFOD01000099 396 0
JFOD01000024 386 0
JFOD01000107 386 0
JFOD01000103 364 0
JFOD01000113 359 0
JFOD01000014 353 0
JFOD01000116 346 0
JFOD01000060 343 0
JFOD01000119 342 0
JFOD01000003 340 0
JFOD01000028 336 0
JFOD01000087 334 0
JFOD01000010 332 0
JFOD01000050 325 0
JFOD01000063 324 0
JFOD01000005 320 0
JFOD01000034 319 0
JFOD01000074 316 0
JFOD01000040 309 0
JFOD01000075 308 0
JFOD01000126 301 0
JFOD01000056 295 0
JFOD01000037 289 0
JFOD01000053 282 0
JFOD01000062 281 0
JFOD01000045 274 0
JFOD01000096 272 0
JFOD01000035 271 0
JFOD01000066 267 0
JFOD01000021 266 0
JFOD01000089 265 0
JFOD01000117 261 0
JFOD01000036 247 0
JFOD01000046 238 0
JFOD01000057 235 0
JFOD01000118 233 0
JFOD01000012 231 0
JFOD01000076 230 0
JFOD01000022 227 0
JFOD01000020 226 0
JFOD01000137 226 0
JFOD01000105 225 0
JFOD01000048 219 0
JFOD01000070 217 0
JFOD01000094 216 0
JFOD01000051 214 0
JFOD01000127 214 0
JFOD01000106 212 0
JFOD01000115 208 0
JFOD01000008 206 0
JFOD01000043 205 0
JFOD01000097 204 0
JFOD01000129 203 0
JFOD01000095 203 0
JFOD01000007 202 0
Total 1,516,364 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635255.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635255.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635255.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635255.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635255.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635255.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635255.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635255.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635255.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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