cyanobase » Prochlorococcus sp. scB245a_521K15

Prochlorococcus sp. scB245a_521K15

Summary

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Data source name GCA_000635235.1
Full name Prochlorococcus sp. scB245a_521K15 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNZ01000134 321,423 0
JFNZ01000286 227,198 0
JFNZ01000001 171,978 0
JFNZ01000212 149,538 0
JFNZ01000078 69,386 0
JFNZ01000088 52,579 0
JFNZ01000087 50,290 0
JFNZ01000269 40,071 0
JFNZ01000090 29,537 0
JFNZ01000075 26,652 0
JFNZ01000111 20,995 0
JFNZ01000268 18,723 0
JFNZ01000288 15,885 0
JFNZ01000182 15,657 0
JFNZ01000017 14,849 0
JFNZ01000022 13,331 0
JFNZ01000215 11,628 0
JFNZ01000285 10,267 0
JFNZ01000110 9,335 0
JFNZ01000100 9,265 0
JFNZ01000136 6,892 0
JFNZ01000296 6,626 0
JFNZ01000135 6,430 0
JFNZ01000181 5,844 0
JFNZ01000207 5,461 0
JFNZ01000284 4,317 0
JFNZ01000074 3,534 0
JFNZ01000021 2,924 0
JFNZ01000101 2,765 0
JFNZ01000214 2,193 0
JFNZ01000091 2,117 0
JFNZ01000319 2,103 0
JFNZ01000177 2,060 0
JFNZ01000108 2,042 0
JFNZ01000179 1,962 0
JFNZ01000287 1,882 0
JFNZ01000037 1,821 0
JFNZ01000053 1,772 0
JFNZ01000039 1,697 0
JFNZ01000018 1,691 0
JFNZ01000070 1,547 0
JFNZ01000213 1,503 0
JFNZ01000180 1,496 0
JFNZ01000233 1,480 0
JFNZ01000234 1,480 0
JFNZ01000019 1,467 0
JFNZ01000300 1,460 0
JFNZ01000054 1,420 0
JFNZ01000326 1,368 0
JFNZ01000283 1,358 0
JFNZ01000076 1,339 0
JFNZ01000044 1,335 0
JFNZ01000098 1,314 0
JFNZ01000124 1,291 0
JFNZ01000043 1,226 0
JFNZ01000298 1,210 0
JFNZ01000038 1,203 0
JFNZ01000127 1,188 0
JFNZ01000121 1,184 0
JFNZ01000270 1,167 0
JFNZ01000119 1,167 0
JFNZ01000120 1,161 0
JFNZ01000232 1,153 0
JFNZ01000089 1,142 0
JFNZ01000073 1,135 0
JFNZ01000325 1,115 0
JFNZ01000109 1,092 0
JFNZ01000198 1,083 0
JFNZ01000309 1,062 0
JFNZ01000052 1,049 0
JFNZ01000107 1,028 0
JFNZ01000329 1,006 0
JFNZ01000203 961 0
JFNZ01000301 948 0
JFNZ01000063 943 0
JFNZ01000178 864 0
JFNZ01000302 837 0
JFNZ01000077 807 0
JFNZ01000072 805 0
JFNZ01000208 802 0
JFNZ01000093 789 0
JFNZ01000184 783 0
JFNZ01000299 775 0
JFNZ01000086 760 0
JFNZ01000060 738 0
JFNZ01000122 735 0
JFNZ01000016 732 0
JFNZ01000112 713 0
JFNZ01000211 709 0
JFNZ01000020 687 0
JFNZ01000056 683 0
JFNZ01000307 681 0
JFNZ01000094 677 0
JFNZ01000031 672 0
JFNZ01000106 668 0
JFNZ01000068 666 0
JFNZ01000327 664 0
JFNZ01000193 654 0
JFNZ01000210 641 0
JFNZ01000197 638 0
JFNZ01000113 610 0
JFNZ01000254 603 0
JFNZ01000032 598 0
JFNZ01000209 594 0
JFNZ01000305 593 0
JFNZ01000297 591 0
JFNZ01000058 583 0
JFNZ01000105 578 0
JFNZ01000266 570 0
JFNZ01000220 565 0
JFNZ01000042 559 0
JFNZ01000117 548 0
JFNZ01000115 548 0
JFNZ01000116 548 0
JFNZ01000187 539 0
JFNZ01000049 537 0
JFNZ01000228 536 0
JFNZ01000186 535 0
JFNZ01000240 531 0
JFNZ01000067 529 0
JFNZ01000242 527 0
JFNZ01000035 519 0
JFNZ01000247 503 0
JFNZ01000145 502 0
JFNZ01000114 498 0
JFNZ01000191 495 0
JFNZ01000245 490 0
JFNZ01000104 480 0
JFNZ01000041 480 0
JFNZ01000256 477 0
JFNZ01000277 476 0
JFNZ01000097 476 0
JFNZ01000036 474 0
JFNZ01000102 474 0
JFNZ01000238 473 0
JFNZ01000062 466 0
JFNZ01000235 465 0
JFNZ01000318 462 0
JFNZ01000253 456 0
JFNZ01000064 453 0
JFNZ01000033 452 0
JFNZ01000024 450 0
JFNZ01000236 442 0
JFNZ01000118 441 0
JFNZ01000304 440 0
JFNZ01000276 439 0
JFNZ01000252 435 0
JFNZ01000069 435 0
JFNZ01000324 434 0
JFNZ01000308 434 0
JFNZ01000290 428 0
JFNZ01000206 425 0
JFNZ01000080 416 0
JFNZ01000171 414 0
JFNZ01000059 410 0
JFNZ01000008 406 0
JFNZ01000133 404 0
JFNZ01000028 399 0
JFNZ01000161 398 0
JFNZ01000099 396 0
JFNZ01000061 395 0
JFNZ01000258 395 0
JFNZ01000243 395 0
JFNZ01000202 394 0
JFNZ01000183 390 0
JFNZ01000241 389 0
JFNZ01000201 389 0
JFNZ01000079 381 0
JFNZ01000128 381 0
JFNZ01000176 380 0
JFNZ01000003 379 0
JFNZ01000249 378 0
JFNZ01000278 375 0
JFNZ01000223 374 0
JFNZ01000040 373 0
JFNZ01000306 366 0
JFNZ01000174 366 0
JFNZ01000231 363 0
JFNZ01000125 362 0
JFNZ01000205 360 0
JFNZ01000082 360 0
JFNZ01000095 357 0
JFNZ01000165 354 0
JFNZ01000317 351 0
JFNZ01000013 348 0
JFNZ01000030 347 0
JFNZ01000314 347 0
JFNZ01000154 346 0
JFNZ01000195 345 0
JFNZ01000147 344 0
JFNZ01000271 343 0
JFNZ01000321 342 0
JFNZ01000196 342 0
JFNZ01000011 338 0
JFNZ01000050 337 0
JFNZ01000190 329 0
JFNZ01000092 329 0
JFNZ01000083 327 0
JFNZ01000194 323 0
JFNZ01000224 322 0
JFNZ01000004 322 0
JFNZ01000151 322 0
JFNZ01000140 321 0
JFNZ01000303 319 0
JFNZ01000170 318 0
JFNZ01000142 318 0
JFNZ01000027 316 0
JFNZ01000047 316 0
JFNZ01000123 314 0
JFNZ01000175 311 0
JFNZ01000159 311 0
JFNZ01000260 310 0
JFNZ01000244 310 0
JFNZ01000310 307 0
JFNZ01000163 307 0
JFNZ01000034 306 0
JFNZ01000280 304 0
JFNZ01000281 303 0
JFNZ01000005 303 0
JFNZ01000066 302 0
JFNZ01000132 299 0
JFNZ01000188 298 0
JFNZ01000272 298 0
JFNZ01000282 298 0
JFNZ01000055 297 0
JFNZ01000155 297 0
JFNZ01000239 295 0
JFNZ01000312 294 0
JFNZ01000248 294 0
JFNZ01000311 294 0
JFNZ01000279 292 0
JFNZ01000129 290 0
JFNZ01000158 289 0
JFNZ01000313 288 0
JFNZ01000126 288 0
JFNZ01000320 288 0
JFNZ01000071 288 0
JFNZ01000026 287 0
JFNZ01000096 287 0
JFNZ01000257 284 0
JFNZ01000160 284 0
JFNZ01000222 284 0
JFNZ01000085 282 0
JFNZ01000007 282 0
JFNZ01000166 282 0
JFNZ01000157 276 0
JFNZ01000143 276 0
JFNZ01000262 275 0
JFNZ01000322 274 0
JFNZ01000267 273 0
JFNZ01000225 271 0
JFNZ01000216 270 0
JFNZ01000103 270 0
JFNZ01000130 269 0
JFNZ01000172 267 0
JFNZ01000221 267 0
JFNZ01000264 266 0
JFNZ01000014 265 0
JFNZ01000226 262 0
JFNZ01000230 261 0
JFNZ01000162 261 0
JFNZ01000167 260 0
JFNZ01000149 258 0
JFNZ01000137 258 0
JFNZ01000002 254 0
JFNZ01000081 254 0
JFNZ01000168 253 0
JFNZ01000274 253 0
JFNZ01000246 252 0
JFNZ01000204 251 0
JFNZ01000146 250 0
JFNZ01000261 245 0
JFNZ01000051 242 0
JFNZ01000046 242 0
JFNZ01000289 239 0
JFNZ01000138 237 0
JFNZ01000153 235 0
JFNZ01000029 233 0
JFNZ01000012 233 0
JFNZ01000065 233 0
JFNZ01000217 233 0
JFNZ01000009 232 0
JFNZ01000255 232 0
JFNZ01000292 231 0
JFNZ01000227 230 0
JFNZ01000148 229 0
JFNZ01000048 229 0
JFNZ01000141 229 0
JFNZ01000291 228 0
JFNZ01000259 226 0
JFNZ01000139 226 0
JFNZ01000199 226 0
JFNZ01000316 225 0
JFNZ01000189 225 0
JFNZ01000273 224 0
JFNZ01000200 224 0
JFNZ01000294 224 0
JFNZ01000084 223 0
JFNZ01000275 222 0
JFNZ01000006 222 0
JFNZ01000218 220 0
JFNZ01000169 219 0
JFNZ01000156 218 0
JFNZ01000250 216 0
JFNZ01000045 214 0
JFNZ01000295 213 0
JFNZ01000229 213 0
JFNZ01000164 212 0
JFNZ01000219 212 0
JFNZ01000015 211 0
JFNZ01000265 211 0
JFNZ01000315 211 0
JFNZ01000328 210 0
JFNZ01000010 210 0
JFNZ01000025 210 0
JFNZ01000237 209 0
JFNZ01000293 208 0
JFNZ01000144 208 0
JFNZ01000173 208 0
JFNZ01000131 206 0
JFNZ01000185 205 0
JFNZ01000023 204 0
JFNZ01000251 204 0
JFNZ01000057 204 0
JFNZ01000323 203 0
JFNZ01000152 200 0
JFNZ01000192 200 0
JFNZ01000150 200 0
JFNZ01000263 200 0
Total 1,482,919 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635235.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635235.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635235.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635235.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635235.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635235.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635235.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635235.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635235.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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