cyanobase » Prochlorococcus sp. scB245a_521C8

Prochlorococcus sp. scB245a_521C8

Summary

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Data source name GCA_000635215.1
Full name Prochlorococcus sp. scB245a_521C8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNY01000300 118,748 0
JFNY01000255 95,073 0
JFNY01000238 63,915 0
JFNY01000073 62,614 0
JFNY01000256 60,298 0
JFNY01000278 55,725 0
JFNY01000277 42,407 0
JFNY01000342 39,749 0
JFNY01000257 31,147 0
JFNY01000368 27,666 0
JFNY01000367 25,342 0
JFNY01000285 18,847 0
JFNY01000055 18,114 0
JFNY01000366 11,387 0
JFNY01000074 9,241 0
JFNY01000185 6,854 0
JFNY01000237 6,644 0
JFNY01000364 6,585 0
JFNY01000184 6,182 0
JFNY01000141 5,983 0
JFNY01000138 5,919 0
JFNY01000400 5,290 0
JFNY01000362 5,289 0
JFNY01000186 4,271 0
JFNY01000212 4,203 0
JFNY01000369 3,931 0
JFNY01000365 3,802 0
JFNY01000216 3,206 0
JFNY01000018 3,086 0
JFNY01000147 2,997 0
JFNY01000327 2,856 0
JFNY01000109 2,477 0
JFNY01000363 2,364 0
JFNY01000215 2,320 0
JFNY01000334 2,311 0
JFNY01000322 2,174 0
JFNY01000202 2,142 0
JFNY01000323 2,023 0
JFNY01000403 1,913 0
JFNY01000072 1,859 0
JFNY01000119 1,826 0
JFNY01000407 1,743 0
JFNY01000292 1,705 0
JFNY01000054 1,608 0
JFNY01000117 1,596 0
JFNY01000405 1,593 0
JFNY01000282 1,492 0
JFNY01000296 1,489 0
JFNY01000199 1,466 0
JFNY01000330 1,462 0
JFNY01000069 1,453 0
JFNY01000286 1,428 0
JFNY01000311 1,400 0
JFNY01000021 1,363 0
JFNY01000283 1,356 0
JFNY01000320 1,214 0
JFNY01000010 1,147 0
JFNY01000324 1,142 0
JFNY01000211 1,108 0
JFNY01000182 1,104 0
JFNY01000107 1,102 0
JFNY01000309 1,079 0
JFNY01000071 1,057 0
JFNY01000068 1,043 0
JFNY01000406 1,034 0
JFNY01000086 1,032 0
JFNY01000016 1,019 0
JFNY01000435 1,015 0
JFNY01000207 1,012 0
JFNY01000111 997 0
JFNY01000180 989 0
JFNY01000218 985 0
JFNY01000221 982 0
JFNY01000012 981 0
JFNY01000145 971 0
JFNY01000220 960 0
JFNY01000181 957 0
JFNY01000143 955 0
JFNY01000348 951 0
JFNY01000178 950 0
JFNY01000410 947 0
JFNY01000183 938 0
JFNY01000070 934 0
JFNY01000028 906 0
JFNY01000298 883 0
JFNY01000148 877 0
JFNY01000421 862 0
JFNY01000404 858 0
JFNY01000214 849 0
JFNY01000149 845 0
JFNY01000118 844 0
JFNY01000401 827 0
JFNY01000108 822 0
JFNY01000146 813 0
JFNY01000434 801 0
JFNY01000135 780 0
JFNY01000411 780 0
JFNY01000341 780 0
JFNY01000222 773 0
JFNY01000345 768 0
JFNY01000056 748 0
JFNY01000137 742 0
JFNY01000084 740 0
JFNY01000102 736 0
JFNY01000415 729 0
JFNY01000331 728 0
JFNY01000346 723 0
JFNY01000402 715 0
JFNY01000379 712 0
JFNY01000179 707 0
JFNY01000177 706 0
JFNY01000204 697 0
JFNY01000188 693 0
JFNY01000389 680 0
JFNY01000438 670 0
JFNY01000236 668 0
JFNY01000436 668 0
JFNY01000299 665 0
JFNY01000437 664 0
JFNY01000037 653 0
JFNY01000009 650 0
JFNY01000234 637 0
JFNY01000332 632 0
JFNY01000029 632 0
JFNY01000297 629 0
JFNY01000284 620 0
JFNY01000063 615 0
JFNY01000289 609 0
JFNY01000229 607 0
JFNY01000213 606 0
JFNY01000015 603 0
JFNY01000132 603 0
JFNY01000059 600 0
JFNY01000313 594 0
JFNY01000096 585 0
JFNY01000121 580 0
JFNY01000414 571 0
JFNY01000295 567 0
JFNY01000087 562 0
JFNY01000288 562 0
JFNY01000374 556 0
JFNY01000426 555 0
JFNY01000198 554 0
JFNY01000321 553 0
JFNY01000235 541 0
JFNY01000210 536 0
JFNY01000310 532 0
JFNY01000383 529 0
JFNY01000008 527 0
JFNY01000356 526 0
JFNY01000335 526 0
JFNY01000294 525 0
JFNY01000035 524 0
JFNY01000159 523 0
JFNY01000231 522 0
JFNY01000127 521 0
JFNY01000333 520 0
JFNY01000409 519 0
JFNY01000420 516 0
JFNY01000060 515 0
JFNY01000370 513 0
JFNY01000423 513 0
JFNY01000144 501 0
JFNY01000301 500 0
JFNY01000226 500 0
JFNY01000201 499 0
JFNY01000116 495 0
JFNY01000326 495 0
JFNY01000425 489 0
JFNY01000058 488 0
JFNY01000312 488 0
JFNY01000067 485 0
JFNY01000209 485 0
JFNY01000195 482 0
JFNY01000078 479 0
JFNY01000317 477 0
JFNY01000336 476 0
JFNY01000139 475 0
JFNY01000104 475 0
JFNY01000290 470 0
JFNY01000099 470 0
JFNY01000034 470 0
JFNY01000110 469 0
JFNY01000287 469 0
JFNY01000005 466 0
JFNY01000173 465 0
JFNY01000192 462 0
JFNY01000157 461 0
JFNY01000305 455 0
JFNY01000378 454 0
JFNY01000196 453 0
JFNY01000387 448 0
JFNY01000128 446 0
JFNY01000142 443 0
JFNY01000224 439 0
JFNY01000174 437 0
JFNY01000353 436 0
JFNY01000120 436 0
JFNY01000101 435 0
JFNY01000205 432 0
JFNY01000217 432 0
JFNY01000232 429 0
JFNY01000395 426 0
JFNY01000007 421 0
JFNY01000306 419 0
JFNY01000200 418 0
JFNY01000228 418 0
JFNY01000361 417 0
JFNY01000113 414 0
JFNY01000045 413 0
JFNY01000175 410 0
JFNY01000391 410 0
JFNY01000319 410 0
JFNY01000385 405 0
JFNY01000024 403 0
JFNY01000307 399 0
JFNY01000427 398 0
JFNY01000049 396 0
JFNY01000190 396 0
JFNY01000065 392 0
JFNY01000026 387 0
JFNY01000293 387 0
JFNY01000276 384 0
JFNY01000050 383 0
JFNY01000318 382 0
JFNY01000089 381 0
JFNY01000150 379 0
JFNY01000187 376 0
JFNY01000219 373 0
JFNY01000158 370 0
JFNY01000062 370 0
JFNY01000422 369 0
JFNY01000413 368 0
JFNY01000302 368 0
JFNY01000373 364 0
JFNY01000357 363 0
JFNY01000114 363 0
JFNY01000136 362 0
JFNY01000133 358 0
JFNY01000412 358 0
JFNY01000428 358 0
JFNY01000381 355 0
JFNY01000051 355 0
JFNY01000390 354 0
JFNY01000088 354 0
JFNY01000052 354 0
JFNY01000245 353 0
JFNY01000164 352 0
JFNY01000279 346 0
JFNY01000025 345 0
JFNY01000031 345 0
JFNY01000106 344 0
JFNY01000352 341 0
JFNY01000351 340 0
JFNY01000372 339 0
JFNY01000154 339 0
JFNY01000064 338 0
JFNY01000262 338 0
JFNY01000380 337 0
JFNY01000194 337 0
JFNY01000152 335 0
JFNY01000377 334 0
JFNY01000354 332 0
JFNY01000033 328 0
JFNY01000349 326 0
JFNY01000315 323 0
JFNY01000223 322 0
JFNY01000417 322 0
JFNY01000408 320 0
JFNY01000429 315 0
JFNY01000206 313 0
JFNY01000022 310 0
JFNY01000151 310 0
JFNY01000004 310 0
JFNY01000265 309 0
JFNY01000233 309 0
JFNY01000343 308 0
JFNY01000172 307 0
JFNY01000424 307 0
JFNY01000272 306 0
JFNY01000103 306 0
JFNY01000093 305 0
JFNY01000061 305 0
JFNY01000057 304 0
JFNY01000418 303 0
JFNY01000165 303 0
JFNY01000225 301 0
JFNY01000359 300 0
JFNY01000044 300 0
JFNY01000358 298 0
JFNY01000396 298 0
JFNY01000140 298 0
JFNY01000077 297 0
JFNY01000347 297 0
JFNY01000171 296 0
JFNY01000308 295 0
JFNY01000011 295 0
JFNY01000002 295 0
JFNY01000328 294 0
JFNY01000382 294 0
JFNY01000329 293 0
JFNY01000176 293 0
JFNY01000325 291 0
JFNY01000027 291 0
JFNY01000079 290 0
JFNY01000203 289 0
JFNY01000393 289 0
JFNY01000013 288 0
JFNY01000014 286 0
JFNY01000271 285 0
JFNY01000189 285 0
JFNY01000020 284 0
JFNY01000075 284 0
JFNY01000092 283 0
JFNY01000083 282 0
JFNY01000291 281 0
JFNY01000041 278 0
JFNY01000170 278 0
JFNY01000197 277 0
JFNY01000080 277 0
JFNY01000251 276 0
JFNY01000337 275 0
JFNY01000242 274 0
JFNY01000250 274 0
JFNY01000350 274 0
JFNY01000252 273 0
JFNY01000355 272 0
JFNY01000129 271 0
JFNY01000047 271 0
JFNY01000066 269 0
JFNY01000416 268 0
JFNY01000156 268 0
JFNY01000270 267 0
JFNY01000126 267 0
JFNY01000038 266 0
JFNY01000134 264 0
JFNY01000253 263 0
JFNY01000246 262 0
JFNY01000392 262 0
JFNY01000247 262 0
JFNY01000432 261 0
JFNY01000017 261 0
JFNY01000386 260 0
JFNY01000239 260 0
JFNY01000081 259 0
JFNY01000097 258 0
JFNY01000339 256 0
JFNY01000419 256 0
JFNY01000155 254 0
JFNY01000244 254 0
JFNY01000240 254 0
JFNY01000384 253 0
JFNY01000006 253 0
JFNY01000280 252 0
JFNY01000001 249 0
JFNY01000082 249 0
JFNY01000130 249 0
JFNY01000264 248 0
JFNY01000131 248 0
JFNY01000338 247 0
JFNY01000043 247 0
JFNY01000162 247 0
JFNY01000249 246 0
JFNY01000269 246 0
JFNY01000153 245 0
JFNY01000273 244 0
JFNY01000241 244 0
JFNY01000095 244 0
JFNY01000100 244 0
JFNY01000439 243 0
JFNY01000371 241 0
JFNY01000433 241 0
JFNY01000003 241 0
JFNY01000040 240 0
JFNY01000193 240 0
JFNY01000191 239 0
JFNY01000208 239 0
JFNY01000168 238 0
JFNY01000085 237 0
JFNY01000105 236 0
JFNY01000076 236 0
JFNY01000431 235 0
JFNY01000230 234 0
JFNY01000123 233 0
JFNY01000267 232 0
JFNY01000360 232 0
JFNY01000163 232 0
JFNY01000125 232 0
JFNY01000344 229 0
JFNY01000303 229 0
JFNY01000039 229 0
JFNY01000094 229 0
JFNY01000046 228 0
JFNY01000398 228 0
JFNY01000399 228 0
JFNY01000376 226 0
JFNY01000090 226 0
JFNY01000098 223 0
JFNY01000166 223 0
JFNY01000340 222 0
JFNY01000019 221 0
JFNY01000275 220 0
JFNY01000042 220 0
JFNY01000314 219 0
JFNY01000248 218 0
JFNY01000281 217 0
JFNY01000261 216 0
JFNY01000388 215 0
JFNY01000227 214 0
JFNY01000091 214 0
JFNY01000268 212 0
JFNY01000023 211 0
JFNY01000304 210 0
JFNY01000122 210 0
JFNY01000169 210 0
JFNY01000243 209 0
JFNY01000167 209 0
JFNY01000036 209 0
JFNY01000048 209 0
JFNY01000274 209 0
JFNY01000112 208 0
JFNY01000397 208 0
JFNY01000263 207 0
JFNY01000266 207 0
JFNY01000160 206 0
JFNY01000260 206 0
JFNY01000258 205 0
JFNY01000053 205 0
JFNY01000254 205 0
JFNY01000316 205 0
JFNY01000161 203 0
JFNY01000394 203 0
JFNY01000259 203 0
JFNY01000115 203 0
JFNY01000030 202 0
JFNY01000430 202 0
JFNY01000124 201 0
JFNY01000032 200 0
JFNY01000375 200 0
Total 966,833 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635215.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635215.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635215.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635215.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635215.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635215.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635215.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635215.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635215.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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