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cyanobase » Prochlorococcus sp. scB245a_519L21

Prochlorococcus sp. scB245a_519L21

Summary

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Data source name GCA_000635195.1
Full name Prochlorococcus sp. scB245a_519L21
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNN01000001 250,840 0
JFNN01000068 209,614 0
JFNN01000254 154,035 0
JFNN01000095 121,317 0
JFNN01000220 91,354 0
JFNN01000024 60,886 0
JFNN01000116 45,042 0
JFNN01000094 40,944 0
JFNN01000122 37,499 0
JFNN01000025 33,570 0
JFNN01000087 33,004 0
JFNN01000063 23,530 0
JFNN01000121 20,187 0
JFNN01000119 17,326 0
JFNN01000002 14,117 0
JFNN01000066 10,854 0
JFNN01000051 8,969 0
JFNN01000062 8,048 0
JFNN01000107 7,588 0
JFNN01000120 6,960 0
JFNN01000027 6,851 0
JFNN01000096 6,809 0
JFNN01000026 5,472 0
JFNN01000214 5,385 0
JFNN01000115 5,320 0
JFNN01000108 4,840 0
JFNN01000060 4,383 0
JFNN01000106 4,295 0
JFNN01000081 3,236 0
JFNN01000302 3,076 0
JFNN01000298 2,976 0
JFNN01000083 2,841 0
JFNN01000070 2,806 0
JFNN01000052 2,729 0
JFNN01000297 2,619 0
JFNN01000272 2,528 0
JFNN01000171 2,348 0
JFNN01000267 2,282 0
JFNN01000278 2,264 0
JFNN01000101 2,246 0
JFNN01000219 2,192 0
JFNN01000228 2,131 0
JFNN01000084 2,130 0
JFNN01000268 2,073 0
JFNN01000239 2,019 0
JFNN01000088 1,966 0
JFNN01000269 1,960 0
JFNN01000274 1,930 0
JFNN01000172 1,865 0
JFNN01000041 1,773 0
JFNN01000300 1,715 0
JFNN01000028 1,661 0
JFNN01000071 1,589 0
JFNN01000067 1,552 0
JFNN01000114 1,516 0
JFNN01000093 1,506 0
JFNN01000216 1,496 0
JFNN01000299 1,493 0
JFNN01000305 1,481 0
JFNN01000040 1,477 0
JFNN01000098 1,462 0
JFNN01000179 1,428 0
JFNN01000240 1,428 0
JFNN01000092 1,317 0
JFNN01000222 1,292 0
JFNN01000308 1,284 0
JFNN01000034 1,253 0
JFNN01000245 1,249 0
JFNN01000044 1,236 0
JFNN01000117 1,216 0
JFNN01000201 1,206 0
JFNN01000279 1,196 0
JFNN01000123 1,194 0
JFNN01000174 1,185 0
JFNN01000304 1,185 0
JFNN01000241 1,184 0
JFNN01000218 1,184 0
JFNN01000170 1,160 0
JFNN01000112 1,143 0
JFNN01000203 1,138 0
JFNN01000050 1,118 0
JFNN01000033 1,082 0
JFNN01000173 1,080 0
JFNN01000271 1,018 0
JFNN01000046 999 0
JFNN01000061 982 0
JFNN01000128 970 0
JFNN01000182 959 0
JFNN01000270 950 0
JFNN01000145 935 0
JFNN01000197 913 0
JFNN01000111 905 0
JFNN01000273 898 0
JFNN01000215 896 0
JFNN01000118 892 0
JFNN01000147 886 0
JFNN01000276 872 0
JFNN01000113 871 0
JFNN01000238 871 0
JFNN01000277 848 0
JFNN01000165 820 0
JFNN01000256 817 0
JFNN01000133 817 0
JFNN01000280 800 0
JFNN01000135 798 0
JFNN01000160 763 0
JFNN01000175 761 0
JFNN01000155 759 0
JFNN01000164 758 0
JFNN01000244 745 0
JFNN01000072 742 0
JFNN01000206 732 0
JFNN01000282 722 0
JFNN01000127 718 0
JFNN01000042 703 0
JFNN01000091 703 0
JFNN01000212 693 0
JFNN01000076 688 0
JFNN01000167 687 0
JFNN01000032 667 0
JFNN01000100 665 0
JFNN01000288 647 0
JFNN01000131 637 0
JFNN01000163 634 0
JFNN01000082 631 0
JFNN01000286 624 0
JFNN01000309 616 0
JFNN01000235 616 0
JFNN01000156 607 0
JFNN01000130 605 0
JFNN01000306 601 0
JFNN01000161 601 0
JFNN01000168 598 0
JFNN01000199 592 0
JFNN01000038 580 0
JFNN01000307 578 0
JFNN01000226 576 0
JFNN01000059 576 0
JFNN01000029 571 0
JFNN01000047 564 0
JFNN01000124 555 0
JFNN01000105 555 0
JFNN01000301 552 0
JFNN01000232 552 0
JFNN01000185 549 0
JFNN01000260 546 0
JFNN01000110 541 0
JFNN01000148 529 0
JFNN01000249 527 0
JFNN01000158 509 0
JFNN01000103 503 0
JFNN01000077 499 0
JFNN01000284 493 0
JFNN01000283 489 0
JFNN01000275 485 0
JFNN01000132 478 0
JFNN01000152 478 0
JFNN01000181 468 0
JFNN01000252 462 0
JFNN01000177 457 0
JFNN01000099 457 0
JFNN01000213 454 0
JFNN01000221 448 0
JFNN01000251 444 0
JFNN01000224 442 0
JFNN01000157 440 0
JFNN01000176 436 0
JFNN01000229 435 0
JFNN01000234 434 0
JFNN01000080 432 0
JFNN01000209 428 0
JFNN01000074 422 0
JFNN01000285 419 0
JFNN01000243 416 0
JFNN01000125 409 0
JFNN01000073 409 0
JFNN01000258 407 0
JFNN01000150 407 0
JFNN01000186 406 0
JFNN01000054 405 0
JFNN01000129 404 0
JFNN01000287 398 0
JFNN01000262 395 0
JFNN01000075 394 0
JFNN01000211 393 0
JFNN01000013 384 0
JFNN01000086 384 0
JFNN01000196 379 0
JFNN01000136 376 0
JFNN01000281 376 0
JFNN01000159 374 0
JFNN01000055 369 0
JFNN01000208 368 0
JFNN01000205 367 0
JFNN01000259 367 0
JFNN01000198 361 0
JFNN01000104 357 0
JFNN01000169 356 0
JFNN01000292 354 0
JFNN01000263 351 0
JFNN01000233 350 0
JFNN01000085 347 0
JFNN01000151 345 0
JFNN01000037 345 0
JFNN01000064 345 0
JFNN01000102 343 0
JFNN01000043 330 0
JFNN01000144 330 0
JFNN01000294 323 0
JFNN01000126 321 0
JFNN01000142 320 0
JFNN01000183 316 0
JFNN01000230 314 0
JFNN01000140 313 0
JFNN01000200 311 0
JFNN01000048 311 0
JFNN01000153 310 0
JFNN01000139 308 0
JFNN01000217 305 0
JFNN01000246 304 0
JFNN01000192 301 0
JFNN01000089 299 0
JFNN01000227 299 0
JFNN01000248 299 0
JFNN01000090 291 0
JFNN01000031 290 0
JFNN01000236 289 0
JFNN01000069 285 0
JFNN01000223 285 0
JFNN01000293 283 0
JFNN01000237 282 0
JFNN01000019 277 0
JFNN01000210 277 0
JFNN01000036 275 0
JFNN01000204 274 0
JFNN01000184 273 0
JFNN01000030 273 0
JFNN01000049 272 0
JFNN01000231 271 0
JFNN01000138 267 0
JFNN01000023 266 0
JFNN01000193 264 0
JFNN01000187 263 0
JFNN01000149 263 0
JFNN01000202 263 0
JFNN01000194 262 0
JFNN01000078 261 0
JFNN01000022 260 0
JFNN01000005 259 0
JFNN01000225 258 0
JFNN01000296 253 0
JFNN01000017 251 0
JFNN01000264 250 0
JFNN01000003 250 0
JFNN01000255 249 0
JFNN01000065 249 0
JFNN01000242 248 0
JFNN01000079 248 0
JFNN01000141 247 0
JFNN01000045 243 0
JFNN01000015 242 0
JFNN01000250 241 0
JFNN01000191 240 0
JFNN01000195 240 0
JFNN01000207 238 0
JFNN01000146 237 0
JFNN01000057 237 0
JFNN01000004 236 0
JFNN01000303 234 0
JFNN01000291 234 0
JFNN01000178 233 0
JFNN01000056 233 0
JFNN01000265 228 0
JFNN01000018 228 0
JFNN01000261 227 0
JFNN01000097 226 0
JFNN01000021 226 0
JFNN01000058 226 0
JFNN01000266 226 0
JFNN01000295 225 0
JFNN01000154 224 0
JFNN01000109 223 0
JFNN01000012 222 0
JFNN01000137 219 0
JFNN01000166 219 0
JFNN01000011 216 0
JFNN01000189 215 0
JFNN01000020 215 0
JFNN01000180 214 0
JFNN01000188 212 0
JFNN01000035 212 0
JFNN01000010 211 0
JFNN01000006 210 0
JFNN01000253 210 0
JFNN01000053 210 0
JFNN01000016 208 0
JFNN01000290 208 0
JFNN01000134 207 0
JFNN01000162 207 0
JFNN01000039 206 0
JFNN01000190 205 0
JFNN01000007 205 0
JFNN01000008 204 0
JFNN01000247 204 0
JFNN01000143 203 0
JFNN01000289 202 0
JFNN01000257 201 0
JFNN01000014 201 0
JFNN01000009 200 0
Total 1,431,706 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000635195.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000635195.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000635195.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000635195.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635195.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635195.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635195.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635195.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635195.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635195.1/genes/interpro.txt (File format)

MicrobeBase