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cyanobase » Prochlorococcus sp. scB245a_519E23

Prochlorococcus sp. scB245a_519E23

Summary

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Data source name GCA_000635175.1
Full name Prochlorococcus sp. scB245a_519E23 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNL01000197 210,347 0
JFNL01000046 132,131 0
JFNL01000333 123,188 0
JFNL01000335 112,041 0
JFNL01000001 52,993 0
JFNL01000206 36,767 0
JFNL01000127 33,639 0
JFNL01000330 33,123 0
JFNL01000126 32,930 0
JFNL01000209 28,289 0
JFNL01000332 26,989 0
JFNL01000257 19,313 0
JFNL01000124 18,287 0
JFNL01000128 17,761 0
JFNL01000334 16,888 0
JFNL01000331 16,236 0
JFNL01000211 15,909 0
JFNL01000207 13,117 0
JFNL01000208 10,485 0
JFNL01000044 7,483 0
JFNL01000050 7,330 0
JFNL01000123 7,052 0
JFNL01000315 6,970 0
JFNL01000318 6,950 0
JFNL01000051 6,106 0
JFNL01000321 5,858 0
JFNL01000381 4,744 0
JFNL01000245 4,648 0
JFNL01000357 3,962 0
JFNL01000045 3,882 0
JFNL01000240 3,389 0
JFNL01000177 3,202 0
JFNL01000252 3,146 0
JFNL01000120 2,900 0
JFNL01000275 2,532 0
JFNL01000232 2,257 0
JFNL01000336 2,234 0
JFNL01000244 2,183 0
JFNL01000239 2,126 0
JFNL01000202 2,033 0
JFNL01000234 2,002 0
JFNL01000242 1,980 0
JFNL01000243 1,925 0
JFNL01000180 1,923 0
JFNL01000319 1,905 0
JFNL01000118 1,884 0
JFNL01000193 1,752 0
JFNL01000254 1,735 0
JFNL01000237 1,547 0
JFNL01000047 1,524 0
JFNL01000247 1,517 0
JFNL01000283 1,517 0
JFNL01000307 1,367 0
JFNL01000159 1,346 0
JFNL01000320 1,334 0
JFNL01000301 1,278 0
JFNL01000228 1,252 0
JFNL01000276 1,218 0
JFNL01000282 1,212 0
JFNL01000179 1,190 0
JFNL01000285 1,190 0
JFNL01000358 1,157 0
JFNL01000194 1,149 0
JFNL01000134 1,138 0
JFNL01000131 1,114 0
JFNL01000263 1,013 0
JFNL01000236 1,003 0
JFNL01000196 997 0
JFNL01000284 992 0
JFNL01000178 986 0
JFNL01000342 970 0
JFNL01000146 962 0
JFNL01000298 960 0
JFNL01000052 949 0
JFNL01000265 942 0
JFNL01000122 925 0
JFNL01000163 883 0
JFNL01000241 878 0
JFNL01000033 878 0
JFNL01000246 873 0
JFNL01000141 868 0
JFNL01000161 865 0
JFNL01000167 863 0
JFNL01000114 862 0
JFNL01000264 861 0
JFNL01000402 841 0
JFNL01000205 834 0
JFNL01000182 820 0
JFNL01000293 815 0
JFNL01000104 814 0
JFNL01000200 803 0
JFNL01000311 799 0
JFNL01000041 775 0
JFNL01000049 766 0
JFNL01000199 755 0
JFNL01000269 743 0
JFNL01000361 733 0
JFNL01000117 728 0
JFNL01000109 713 0
JFNL01000271 709 0
JFNL01000317 707 0
JFNL01000291 697 0
JFNL01000064 692 0
JFNL01000097 677 0
JFNL01000286 677 0
JFNL01000261 675 0
JFNL01000359 669 0
JFNL01000259 667 0
JFNL01000057 667 0
JFNL01000112 649 0
JFNL01000267 647 0
JFNL01000002 647 0
JFNL01000195 646 0
JFNL01000249 642 0
JFNL01000060 641 0
JFNL01000038 637 0
JFNL01000142 632 0
JFNL01000130 631 0
JFNL01000362 630 0
JFNL01000093 629 0
JFNL01000184 625 0
JFNL01000404 623 0
JFNL01000155 622 0
JFNL01000137 621 0
JFNL01000316 599 0
JFNL01000266 584 0
JFNL01000176 580 0
JFNL01000037 578 0
JFNL01000306 576 0
JFNL01000344 569 0
JFNL01000164 567 0
JFNL01000072 564 0
JFNL01000154 560 0
JFNL01000256 558 0
JFNL01000253 557 0
JFNL01000203 557 0
JFNL01000085 555 0
JFNL01000270 555 0
JFNL01000350 554 0
JFNL01000323 554 0
JFNL01000230 552 0
JFNL01000042 548 0
JFNL01000054 546 0
JFNL01000272 539 0
JFNL01000191 537 0
JFNL01000217 534 0
JFNL01000021 534 0
JFNL01000091 533 0
JFNL01000255 527 0
JFNL01000040 527 0
JFNL01000055 525 0
JFNL01000181 521 0
JFNL01000172 519 0
JFNL01000101 517 0
JFNL01000382 516 0
JFNL01000400 511 0
JFNL01000173 511 0
JFNL01000015 509 0
JFNL01000248 506 0
JFNL01000065 493 0
JFNL01000295 493 0
JFNL01000095 480 0
JFNL01000088 471 0
JFNL01000299 470 0
JFNL01000395 464 0
JFNL01000071 463 0
JFNL01000198 460 0
JFNL01000312 457 0
JFNL01000251 455 0
JFNL01000403 454 0
JFNL01000409 452 0
JFNL01000339 446 0
JFNL01000162 446 0
JFNL01000113 440 0
JFNL01000289 440 0
JFNL01000092 438 0
JFNL01000174 431 0
JFNL01000083 431 0
JFNL01000262 431 0
JFNL01000143 430 0
JFNL01000221 429 0
JFNL01000360 427 0
JFNL01000105 419 0
JFNL01000300 416 0
JFNL01000030 415 0
JFNL01000160 412 0
JFNL01000116 411 0
JFNL01000099 409 0
JFNL01000081 408 0
JFNL01000305 406 0
JFNL01000061 405 0
JFNL01000340 404 0
JFNL01000231 401 0
JFNL01000188 400 0
JFNL01000080 400 0
JFNL01000374 395 0
JFNL01000304 394 0
JFNL01000394 393 0
JFNL01000337 392 0
JFNL01000053 389 0
JFNL01000313 387 0
JFNL01000156 386 0
JFNL01000260 383 0
JFNL01000018 376 0
JFNL01000170 376 0
JFNL01000077 374 0
JFNL01000408 374 0
JFNL01000370 374 0
JFNL01000366 366 0
JFNL01000390 366 0
JFNL01000111 365 0
JFNL01000187 363 0
JFNL01000140 360 0
JFNL01000338 359 0
JFNL01000019 359 0
JFNL01000220 356 0
JFNL01000063 356 0
JFNL01000058 353 0
JFNL01000070 353 0
JFNL01000392 350 0
JFNL01000277 350 0
JFNL01000014 348 0
JFNL01000036 347 0
JFNL01000372 347 0
JFNL01000391 346 0
JFNL01000364 346 0
JFNL01000089 345 0
JFNL01000026 341 0
JFNL01000388 341 0
JFNL01000016 340 0
JFNL01000363 340 0
JFNL01000192 339 0
JFNL01000078 339 0
JFNL01000103 339 0
JFNL01000258 338 0
JFNL01000385 337 0
JFNL01000377 335 0
JFNL01000393 334 0
JFNL01000308 333 0
JFNL01000219 333 0
JFNL01000150 331 0
JFNL01000169 330 0
JFNL01000250 329 0
JFNL01000186 329 0
JFNL01000133 325 0
JFNL01000132 323 0
JFNL01000405 321 0
JFNL01000035 320 0
JFNL01000233 320 0
JFNL01000229 319 0
JFNL01000029 318 0
JFNL01000129 317 0
JFNL01000204 315 0
JFNL01000326 315 0
JFNL01000376 315 0
JFNL01000175 315 0
JFNL01000226 315 0
JFNL01000048 314 0
JFNL01000368 312 0
JFNL01000119 312 0
JFNL01000024 310 0
JFNL01000023 309 0
JFNL01000235 308 0
JFNL01000288 308 0
JFNL01000032 308 0
JFNL01000373 303 0
JFNL01000171 303 0
JFNL01000297 302 0
JFNL01000157 302 0
JFNL01000166 301 0
JFNL01000396 298 0
JFNL01000190 297 0
JFNL01000328 292 0
JFNL01000341 292 0
JFNL01000222 291 0
JFNL01000183 291 0
JFNL01000310 291 0
JFNL01000296 291 0
JFNL01000280 288 0
JFNL01000056 287 0
JFNL01000380 286 0
JFNL01000073 285 0
JFNL01000365 283 0
JFNL01000106 282 0
JFNL01000384 280 0
JFNL01000153 280 0
JFNL01000287 280 0
JFNL01000397 279 0
JFNL01000087 278 0
JFNL01000147 278 0
JFNL01000407 277 0
JFNL01000100 276 0
JFNL01000214 275 0
JFNL01000031 275 0
JFNL01000158 273 0
JFNL01000145 270 0
JFNL01000349 269 0
JFNL01000102 269 0
JFNL01000086 268 0
JFNL01000012 267 0
JFNL01000268 265 0
JFNL01000022 264 0
JFNL01000107 264 0
JFNL01000329 261 0
JFNL01000144 260 0
JFNL01000008 260 0
JFNL01000343 259 0
JFNL01000371 259 0
JFNL01000401 256 0
JFNL01000043 253 0
JFNL01000110 252 0
JFNL01000020 252 0
JFNL01000084 252 0
JFNL01000378 251 0
JFNL01000212 251 0
JFNL01000302 250 0
JFNL01000069 249 0
JFNL01000347 249 0
JFNL01000135 249 0
JFNL01000039 248 0
JFNL01000218 248 0
JFNL01000152 248 0
JFNL01000346 245 0
JFNL01000303 245 0
JFNL01000168 244 0
JFNL01000027 244 0
JFNL01000067 244 0
JFNL01000367 244 0
JFNL01000383 244 0
JFNL01000068 244 0
JFNL01000138 243 0
JFNL01000096 242 0
JFNL01000406 242 0
JFNL01000006 242 0
JFNL01000375 240 0
JFNL01000294 239 0
JFNL01000062 239 0
JFNL01000351 239 0
JFNL01000324 237 0
JFNL01000225 237 0
JFNL01000005 235 0
JFNL01000004 233 0
JFNL01000151 233 0
JFNL01000353 232 0
JFNL01000139 232 0
JFNL01000010 232 0
JFNL01000076 230 0
JFNL01000201 230 0
JFNL01000017 230 0
JFNL01000273 229 0
JFNL01000213 229 0
JFNL01000290 229 0
JFNL01000327 229 0
JFNL01000223 229 0
JFNL01000386 228 0
JFNL01000274 227 0
JFNL01000215 227 0
JFNL01000108 224 0
JFNL01000398 224 0
JFNL01000165 224 0
JFNL01000379 224 0
JFNL01000369 224 0
JFNL01000098 222 0
JFNL01000185 221 0
JFNL01000066 220 0
JFNL01000090 219 0
JFNL01000094 218 0
JFNL01000148 217 0
JFNL01000189 217 0
JFNL01000345 217 0
JFNL01000314 217 0
JFNL01000034 217 0
JFNL01000348 217 0
JFNL01000399 217 0
JFNL01000224 216 0
JFNL01000011 216 0
JFNL01000074 216 0
JFNL01000279 216 0
JFNL01000079 215 0
JFNL01000292 215 0
JFNL01000355 214 0
JFNL01000121 214 0
JFNL01000013 213 0
JFNL01000059 213 0
JFNL01000238 212 0
JFNL01000025 211 0
JFNL01000003 209 0
JFNL01000309 209 0
JFNL01000125 208 0
JFNL01000352 208 0
JFNL01000356 206 0
JFNL01000075 206 0
JFNL01000387 206 0
JFNL01000028 206 0
JFNL01000354 206 0
JFNL01000115 206 0
JFNL01000082 206 0
JFNL01000325 206 0
JFNL01000009 204 0
JFNL01000149 204 0
JFNL01000216 203 0
JFNL01000007 202 0
JFNL01000278 202 0
JFNL01000281 202 0
JFNL01000136 202 0
JFNL01000227 202 0
JFNL01000322 200 0
JFNL01000210 200 0
JFNL01000389 200 0
Total 1,218,085 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635175.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635175.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635175.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635175.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635175.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635175.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635175.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635175.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635175.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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