cyanobase » Prochlorococcus sp. scB245a_519C7

Prochlorococcus sp. scB245a_519C7

Summary

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Data source name GCA_000635155.1
Full name Prochlorococcus sp. scB245a_519C7 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNJ01000049 197,437 0
JFNJ01000003 134,473 0
JFNJ01000144 132,337 0
JFNJ01000004 99,335 0
JFNJ01000187 87,440 0
JFNJ01000232 86,170 0
JFNJ01000057 64,061 0
JFNJ01000001 61,678 0
JFNJ01000143 58,032 0
JFNJ01000165 34,490 0
JFNJ01000048 33,644 0
JFNJ01000197 31,710 0
JFNJ01000205 25,053 0
JFNJ01000210 20,400 0
JFNJ01000046 18,148 0
JFNJ01000185 13,233 0
JFNJ01000047 13,112 0
JFNJ01000231 11,672 0
JFNJ01000279 10,358 0
JFNJ01000002 8,210 0
JFNJ01000188 8,157 0
JFNJ01000262 7,647 0
JFNJ01000173 6,722 0
JFNJ01000166 6,443 0
JFNJ01000039 6,100 0
JFNJ01000277 4,929 0
JFNJ01000042 4,748 0
JFNJ01000055 4,008 0
JFNJ01000263 3,579 0
JFNJ01000058 3,386 0
JFNJ01000281 3,321 0
JFNJ01000137 3,008 0
JFNJ01000235 3,004 0
JFNJ01000230 2,987 0
JFNJ01000176 2,941 0
JFNJ01000193 2,918 0
JFNJ01000195 2,914 0
JFNJ01000175 2,897 0
JFNJ01000056 2,712 0
JFNJ01000278 2,544 0
JFNJ01000189 2,399 0
JFNJ01000191 2,299 0
JFNJ01000306 2,269 0
JFNJ01000209 2,269 0
JFNJ01000059 2,117 0
JFNJ01000236 1,848 0
JFNJ01000053 1,793 0
JFNJ01000186 1,771 0
JFNJ01000178 1,734 0
JFNJ01000139 1,699 0
JFNJ01000280 1,672 0
JFNJ01000142 1,655 0
JFNJ01000300 1,585 0
JFNJ01000223 1,540 0
JFNJ01000208 1,442 0
JFNJ01000171 1,407 0
JFNJ01000196 1,404 0
JFNJ01000174 1,365 0
JFNJ01000177 1,336 0
JFNJ01000260 1,313 0
JFNJ01000198 1,294 0
JFNJ01000005 1,279 0
JFNJ01000125 1,255 0
JFNJ01000149 1,165 0
JFNJ01000172 1,138 0
JFNJ01000044 1,132 0
JFNJ01000206 1,126 0
JFNJ01000199 1,029 0
JFNJ01000108 1,019 0
JFNJ01000040 1,011 0
JFNJ01000041 1,000 0
JFNJ01000070 973 0
JFNJ01000093 937 0
JFNJ01000051 912 0
JFNJ01000043 902 0
JFNJ01000013 867 0
JFNJ01000265 844 0
JFNJ01000283 828 0
JFNJ01000065 795 0
JFNJ01000234 754 0
JFNJ01000259 746 0
JFNJ01000243 741 0
JFNJ01000096 740 0
JFNJ01000045 737 0
JFNJ01000088 736 0
JFNJ01000182 730 0
JFNJ01000015 721 0
JFNJ01000282 718 0
JFNJ01000094 708 0
JFNJ01000073 692 0
JFNJ01000138 669 0
JFNJ01000140 663 0
JFNJ01000148 651 0
JFNJ01000113 641 0
JFNJ01000054 637 0
JFNJ01000069 637 0
JFNJ01000207 636 0
JFNJ01000181 620 0
JFNJ01000141 619 0
JFNJ01000192 608 0
JFNJ01000269 601 0
JFNJ01000257 600 0
JFNJ01000286 596 0
JFNJ01000112 595 0
JFNJ01000019 580 0
JFNJ01000225 575 0
JFNJ01000089 567 0
JFNJ01000077 564 0
JFNJ01000080 561 0
JFNJ01000090 559 0
JFNJ01000072 553 0
JFNJ01000297 552 0
JFNJ01000190 536 0
JFNJ01000216 530 0
JFNJ01000258 526 0
JFNJ01000068 517 0
JFNJ01000027 516 0
JFNJ01000115 515 0
JFNJ01000239 515 0
JFNJ01000204 515 0
JFNJ01000285 510 0
JFNJ01000237 505 0
JFNJ01000213 497 0
JFNJ01000294 495 0
JFNJ01000037 493 0
JFNJ01000217 492 0
JFNJ01000180 482 0
JFNJ01000288 471 0
JFNJ01000220 466 0
JFNJ01000250 460 0
JFNJ01000103 460 0
JFNJ01000075 456 0
JFNJ01000052 456 0
JFNJ01000006 443 0
JFNJ01000017 443 0
JFNJ01000309 443 0
JFNJ01000033 440 0
JFNJ01000214 431 0
JFNJ01000298 430 0
JFNJ01000084 425 0
JFNJ01000109 418 0
JFNJ01000222 414 0
JFNJ01000087 412 0
JFNJ01000194 408 0
JFNJ01000248 408 0
JFNJ01000066 407 0
JFNJ01000083 404 0
JFNJ01000123 402 0
JFNJ01000304 395 0
JFNJ01000200 394 0
JFNJ01000161 392 0
JFNJ01000310 386 0
JFNJ01000129 386 0
JFNJ01000076 385 0
JFNJ01000095 385 0
JFNJ01000074 384 0
JFNJ01000184 383 0
JFNJ01000150 382 0
JFNJ01000226 382 0
JFNJ01000035 380 0
JFNJ01000291 375 0
JFNJ01000009 372 0
JFNJ01000238 370 0
JFNJ01000183 370 0
JFNJ01000167 368 0
JFNJ01000022 366 0
JFNJ01000016 365 0
JFNJ01000292 360 0
JFNJ01000317 360 0
JFNJ01000157 354 0
JFNJ01000012 354 0
JFNJ01000071 354 0
JFNJ01000023 353 0
JFNJ01000064 352 0
JFNJ01000029 351 0
JFNJ01000136 351 0
JFNJ01000307 349 0
JFNJ01000156 349 0
JFNJ01000163 348 0
JFNJ01000121 346 0
JFNJ01000229 342 0
JFNJ01000287 341 0
JFNJ01000299 341 0
JFNJ01000313 340 0
JFNJ01000106 337 0
JFNJ01000242 335 0
JFNJ01000104 334 0
JFNJ01000135 332 0
JFNJ01000244 330 0
JFNJ01000202 329 0
JFNJ01000100 329 0
JFNJ01000301 327 0
JFNJ01000126 326 0
JFNJ01000099 324 0
JFNJ01000272 322 0
JFNJ01000264 319 0
JFNJ01000097 319 0
JFNJ01000127 318 0
JFNJ01000134 317 0
JFNJ01000007 316 0
JFNJ01000295 316 0
JFNJ01000038 313 0
JFNJ01000086 312 0
JFNJ01000302 311 0
JFNJ01000030 310 0
JFNJ01000018 310 0
JFNJ01000011 307 0
JFNJ01000303 306 0
JFNJ01000098 304 0
JFNJ01000082 304 0
JFNJ01000233 304 0
JFNJ01000008 303 0
JFNJ01000061 302 0
JFNJ01000091 299 0
JFNJ01000316 297 0
JFNJ01000179 294 0
JFNJ01000212 293 0
JFNJ01000101 293 0
JFNJ01000117 288 0
JFNJ01000261 287 0
JFNJ01000249 286 0
JFNJ01000308 284 0
JFNJ01000028 284 0
JFNJ01000107 283 0
JFNJ01000145 283 0
JFNJ01000152 283 0
JFNJ01000118 283 0
JFNJ01000284 282 0
JFNJ01000081 282 0
JFNJ01000170 280 0
JFNJ01000168 280 0
JFNJ01000119 278 0
JFNJ01000021 278 0
JFNJ01000296 278 0
JFNJ01000159 276 0
JFNJ01000311 274 0
JFNJ01000124 274 0
JFNJ01000020 271 0
JFNJ01000293 270 0
JFNJ01000211 270 0
JFNJ01000215 268 0
JFNJ01000102 267 0
JFNJ01000203 266 0
JFNJ01000010 266 0
JFNJ01000221 265 0
JFNJ01000078 264 0
JFNJ01000060 262 0
JFNJ01000289 260 0
JFNJ01000036 255 0
JFNJ01000162 255 0
JFNJ01000024 254 0
JFNJ01000314 252 0
JFNJ01000246 251 0
JFNJ01000219 251 0
JFNJ01000253 251 0
JFNJ01000014 250 0
JFNJ01000315 249 0
JFNJ01000227 248 0
JFNJ01000305 248 0
JFNJ01000255 245 0
JFNJ01000122 243 0
JFNJ01000160 240 0
JFNJ01000025 240 0
JFNJ01000201 240 0
JFNJ01000224 239 0
JFNJ01000120 239 0
JFNJ01000114 239 0
JFNJ01000245 238 0
JFNJ01000218 237 0
JFNJ01000254 236 0
JFNJ01000034 235 0
JFNJ01000079 235 0
JFNJ01000158 232 0
JFNJ01000155 231 0
JFNJ01000266 231 0
JFNJ01000026 230 0
JFNJ01000312 229 0
JFNJ01000267 229 0
JFNJ01000105 229 0
JFNJ01000132 229 0
JFNJ01000268 228 0
JFNJ01000133 226 0
JFNJ01000092 225 0
JFNJ01000169 224 0
JFNJ01000131 223 0
JFNJ01000290 223 0
JFNJ01000062 222 0
JFNJ01000154 222 0
JFNJ01000271 221 0
JFNJ01000130 221 0
JFNJ01000241 219 0
JFNJ01000164 219 0
JFNJ01000256 219 0
JFNJ01000240 218 0
JFNJ01000247 218 0
JFNJ01000273 216 0
JFNJ01000111 216 0
JFNJ01000252 216 0
JFNJ01000031 215 0
JFNJ01000110 215 0
JFNJ01000153 215 0
JFNJ01000085 215 0
JFNJ01000228 211 0
JFNJ01000146 210 0
JFNJ01000274 208 0
JFNJ01000275 206 0
JFNJ01000050 206 0
JFNJ01000251 206 0
JFNJ01000147 204 0
JFNJ01000270 204 0
JFNJ01000067 203 0
JFNJ01000063 203 0
JFNJ01000116 203 0
JFNJ01000276 202 0
JFNJ01000128 202 0
JFNJ01000032 201 0
JFNJ01000151 201 0
Total 1,366,174 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635155.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635155.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635155.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635155.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635155.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635155.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635155.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635155.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635155.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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