cyanobase » Prochlorococcus sp. scB245a_518K17

Prochlorococcus sp. scB245a_518K17

Summary

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Data source name GCA_000635115.1
Full name Prochlorococcus sp. scB245a_518K17 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNF01000138 143,704 0
JFNF01000286 132,289 0
JFNF01000201 122,189 0
JFNF01000063 92,272 0
JFNF01000062 89,410 0
JFNF01000265 81,981 0
JFNF01000283 57,629 0
JFNF01000287 52,053 0
JFNF01000194 49,470 0
JFNF01000057 48,816 0
JFNF01000065 48,010 0
JFNF01000064 46,668 0
JFNF01000284 30,608 0
JFNF01000282 28,319 0
JFNF01000291 23,952 0
JFNF01000264 22,935 0
JFNF01000061 20,488 0
JFNF01000130 19,518 0
JFNF01000170 15,082 0
JFNF01000022 12,985 0
JFNF01000023 11,910 0
JFNF01000281 10,654 0
JFNF01000085 8,188 0
JFNF01000001 7,202 0
JFNF01000132 7,097 0
JFNF01000200 6,198 0
JFNF01000191 5,991 0
JFNF01000058 5,532 0
JFNF01000293 5,135 0
JFNF01000020 4,906 0
JFNF01000195 4,387 0
JFNF01000133 4,366 0
JFNF01000139 4,271 0
JFNF01000180 3,827 0
JFNF01000285 3,690 0
JFNF01000263 3,279 0
JFNF01000198 3,223 0
JFNF01000059 3,078 0
JFNF01000193 3,059 0
JFNF01000121 2,841 0
JFNF01000087 2,568 0
JFNF01000174 2,424 0
JFNF01000307 2,395 0
JFNF01000290 2,278 0
JFNF01000179 2,022 0
JFNF01000308 1,956 0
JFNF01000175 1,943 0
JFNF01000104 1,882 0
JFNF01000081 1,876 0
JFNF01000190 1,719 0
JFNF01000309 1,705 0
JFNF01000236 1,689 0
JFNF01000279 1,683 0
JFNF01000089 1,679 0
JFNF01000106 1,565 0
JFNF01000129 1,527 0
JFNF01000076 1,496 0
JFNF01000173 1,495 0
JFNF01000329 1,411 0
JFNF01000197 1,352 0
JFNF01000012 1,249 0
JFNF01000306 1,198 0
JFNF01000141 1,192 0
JFNF01000103 1,175 0
JFNF01000134 1,114 0
JFNF01000189 1,105 0
JFNF01000015 1,076 0
JFNF01000101 1,059 0
JFNF01000233 1,055 0
JFNF01000018 1,034 0
JFNF01000154 1,031 0
JFNF01000099 1,018 0
JFNF01000135 1,011 0
JFNF01000019 1,001 0
JFNF01000332 998 0
JFNF01000239 985 0
JFNF01000297 938 0
JFNF01000311 889 0
JFNF01000226 875 0
JFNF01000280 869 0
JFNF01000192 867 0
JFNF01000160 842 0
JFNF01000100 838 0
JFNF01000060 835 0
JFNF01000078 826 0
JFNF01000330 822 0
JFNF01000156 818 0
JFNF01000315 817 0
JFNF01000205 813 0
JFNF01000140 792 0
JFNF01000082 790 0
JFNF01000324 778 0
JFNF01000241 766 0
JFNF01000054 756 0
JFNF01000124 727 0
JFNF01000333 722 0
JFNF01000235 720 0
JFNF01000227 719 0
JFNF01000234 711 0
JFNF01000222 686 0
JFNF01000169 681 0
JFNF01000232 680 0
JFNF01000144 679 0
JFNF01000029 669 0
JFNF01000021 658 0
JFNF01000102 656 0
JFNF01000214 641 0
JFNF01000055 640 0
JFNF01000086 635 0
JFNF01000292 635 0
JFNF01000010 614 0
JFNF01000165 612 0
JFNF01000097 601 0
JFNF01000317 599 0
JFNF01000052 593 0
JFNF01000326 591 0
JFNF01000072 591 0
JFNF01000155 588 0
JFNF01000075 587 0
JFNF01000204 584 0
JFNF01000188 583 0
JFNF01000051 582 0
JFNF01000313 581 0
JFNF01000131 578 0
JFNF01000008 555 0
JFNF01000211 537 0
JFNF01000016 534 0
JFNF01000088 533 0
JFNF01000163 530 0
JFNF01000186 529 0
JFNF01000225 526 0
JFNF01000026 525 0
JFNF01000079 523 0
JFNF01000288 522 0
JFNF01000256 522 0
JFNF01000027 517 0
JFNF01000167 507 0
JFNF01000316 500 0
JFNF01000331 499 0
JFNF01000314 498 0
JFNF01000216 496 0
JFNF01000289 490 0
JFNF01000071 487 0
JFNF01000187 482 0
JFNF01000003 481 0
JFNF01000267 480 0
JFNF01000030 479 0
JFNF01000224 474 0
JFNF01000223 471 0
JFNF01000208 469 0
JFNF01000158 469 0
JFNF01000107 465 0
JFNF01000035 464 0
JFNF01000119 463 0
JFNF01000080 462 0
JFNF01000039 462 0
JFNF01000152 459 0
JFNF01000266 459 0
JFNF01000215 455 0
JFNF01000024 450 0
JFNF01000261 447 0
JFNF01000014 447 0
JFNF01000040 446 0
JFNF01000073 445 0
JFNF01000123 443 0
JFNF01000271 441 0
JFNF01000252 440 0
JFNF01000221 440 0
JFNF01000083 437 0
JFNF01000254 433 0
JFNF01000320 432 0
JFNF01000274 425 0
JFNF01000013 412 0
JFNF01000136 411 0
JFNF01000053 405 0
JFNF01000074 401 0
JFNF01000118 400 0
JFNF01000229 398 0
JFNF01000009 398 0
JFNF01000025 397 0
JFNF01000028 394 0
JFNF01000151 393 0
JFNF01000319 387 0
JFNF01000184 387 0
JFNF01000210 385 0
JFNF01000318 382 0
JFNF01000145 381 0
JFNF01000110 380 0
JFNF01000066 377 0
JFNF01000091 376 0
JFNF01000237 373 0
JFNF01000220 373 0
JFNF01000209 373 0
JFNF01000171 371 0
JFNF01000007 368 0
JFNF01000298 367 0
JFNF01000176 366 0
JFNF01000067 362 0
JFNF01000213 358 0
JFNF01000048 358 0
JFNF01000042 357 0
JFNF01000269 355 0
JFNF01000159 351 0
JFNF01000325 350 0
JFNF01000247 349 0
JFNF01000257 345 0
JFNF01000250 340 0
JFNF01000112 336 0
JFNF01000157 336 0
JFNF01000299 336 0
JFNF01000230 336 0
JFNF01000218 333 0
JFNF01000098 329 0
JFNF01000137 327 0
JFNF01000150 326 0
JFNF01000034 325 0
JFNF01000090 324 0
JFNF01000094 323 0
JFNF01000268 320 0
JFNF01000109 320 0
JFNF01000327 319 0
JFNF01000228 318 0
JFNF01000245 316 0
JFNF01000334 316 0
JFNF01000219 315 0
JFNF01000002 315 0
JFNF01000295 315 0
JFNF01000203 312 0
JFNF01000212 312 0
JFNF01000113 311 0
JFNF01000310 310 0
JFNF01000049 308 0
JFNF01000122 304 0
JFNF01000011 304 0
JFNF01000217 304 0
JFNF01000276 302 0
JFNF01000116 301 0
JFNF01000047 300 0
JFNF01000296 300 0
JFNF01000243 298 0
JFNF01000128 297 0
JFNF01000196 297 0
JFNF01000302 295 0
JFNF01000321 295 0
JFNF01000238 294 0
JFNF01000323 294 0
JFNF01000125 291 0
JFNF01000120 291 0
JFNF01000108 291 0
JFNF01000322 290 0
JFNF01000301 288 0
JFNF01000166 288 0
JFNF01000095 288 0
JFNF01000031 287 0
JFNF01000248 281 0
JFNF01000262 280 0
JFNF01000335 279 0
JFNF01000300 276 0
JFNF01000240 273 0
JFNF01000126 272 0
JFNF01000143 270 0
JFNF01000161 270 0
JFNF01000183 269 0
JFNF01000146 268 0
JFNF01000127 268 0
JFNF01000312 267 0
JFNF01000068 266 0
JFNF01000305 266 0
JFNF01000270 263 0
JFNF01000172 259 0
JFNF01000153 259 0
JFNF01000206 258 0
JFNF01000199 257 0
JFNF01000185 256 0
JFNF01000273 255 0
JFNF01000260 254 0
JFNF01000249 254 0
JFNF01000117 254 0
JFNF01000044 254 0
JFNF01000258 253 0
JFNF01000004 251 0
JFNF01000328 251 0
JFNF01000017 249 0
JFNF01000181 248 0
JFNF01000242 247 0
JFNF01000033 247 0
JFNF01000084 246 0
JFNF01000255 241 0
JFNF01000041 240 0
JFNF01000036 240 0
JFNF01000105 239 0
JFNF01000093 239 0
JFNF01000111 239 0
JFNF01000149 239 0
JFNF01000246 238 0
JFNF01000038 235 0
JFNF01000006 233 0
JFNF01000253 232 0
JFNF01000147 231 0
JFNF01000070 231 0
JFNF01000168 230 0
JFNF01000272 230 0
JFNF01000277 229 0
JFNF01000251 228 0
JFNF01000115 227 0
JFNF01000032 226 0
JFNF01000162 226 0
JFNF01000092 225 0
JFNF01000177 224 0
JFNF01000050 222 0
JFNF01000056 221 0
JFNF01000294 220 0
JFNF01000045 219 0
JFNF01000207 216 0
JFNF01000069 215 0
JFNF01000202 214 0
JFNF01000304 214 0
JFNF01000096 214 0
JFNF01000043 214 0
JFNF01000275 212 0
JFNF01000005 210 0
JFNF01000182 208 0
JFNF01000046 207 0
JFNF01000142 206 0
JFNF01000148 205 0
JFNF01000278 205 0
JFNF01000178 204 0
JFNF01000259 204 0
JFNF01000037 203 0
JFNF01000114 202 0
JFNF01000231 202 0
JFNF01000244 202 0
JFNF01000164 201 0
JFNF01000077 200 0
JFNF01000303 161 0
Total 1,405,162 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635115.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635115.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635115.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635115.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635115.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635115.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635115.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635115.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635115.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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