cyanobase » Prochlorococcus sp. scB245a_518J7

Prochlorococcus sp. scB245a_518J7

Summary

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Data source name GCA_000635095.1
Full name Prochlorococcus sp. scB245a_518J7 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNE01000040 274,009 0
JFNE01000008 135,314 0
JFNE01000004 103,611 0
JFNE01000234 78,998 0
JFNE01000310 71,422 0
JFNE01000035 68,855 0
JFNE01000402 64,616 0
JFNE01000311 52,553 0
JFNE01000034 46,158 0
JFNE01000346 31,648 0
JFNE01000002 30,615 0
JFNE01000094 24,798 0
JFNE01000003 17,095 0
JFNE01000187 16,320 0
JFNE01000233 16,137 0
JFNE01000009 14,405 0
JFNE01000095 12,695 0
JFNE01000243 10,166 0
JFNE01000059 9,688 0
JFNE01000413 9,310 0
JFNE01000245 8,868 0
JFNE01000006 8,850 0
JFNE01000426 8,195 0
JFNE01000093 7,240 0
JFNE01000307 6,492 0
JFNE01000308 6,491 0
JFNE01000063 6,440 0
JFNE01000043 5,825 0
JFNE01000144 5,262 0
JFNE01000001 4,571 0
JFNE01000235 4,286 0
JFNE01000238 3,798 0
JFNE01000352 3,757 0
JFNE01000091 3,515 0
JFNE01000033 3,432 0
JFNE01000347 3,010 0
JFNE01000140 2,846 0
JFNE01000044 2,536 0
JFNE01000396 2,390 0
JFNE01000309 2,382 0
JFNE01000232 2,200 0
JFNE01000349 2,180 0
JFNE01000228 2,044 0
JFNE01000218 2,002 0
JFNE01000036 1,884 0
JFNE01000246 1,778 0
JFNE01000397 1,738 0
JFNE01000058 1,731 0
JFNE01000385 1,729 0
JFNE01000065 1,690 0
JFNE01000343 1,669 0
JFNE01000251 1,665 0
JFNE01000306 1,556 0
JFNE01000406 1,515 0
JFNE01000340 1,475 0
JFNE01000066 1,413 0
JFNE01000062 1,378 0
JFNE01000387 1,371 0
JFNE01000226 1,356 0
JFNE01000414 1,350 0
JFNE01000225 1,331 0
JFNE01000353 1,282 0
JFNE01000398 1,276 0
JFNE01000186 1,238 0
JFNE01000223 1,238 0
JFNE01000177 1,208 0
JFNE01000266 1,204 0
JFNE01000366 1,197 0
JFNE01000244 1,172 0
JFNE01000237 1,164 0
JFNE01000203 1,158 0
JFNE01000214 1,158 0
JFNE01000097 1,142 0
JFNE01000269 1,129 0
JFNE01000159 1,128 0
JFNE01000133 1,103 0
JFNE01000147 1,098 0
JFNE01000046 1,081 0
JFNE01000010 1,079 0
JFNE01000395 1,053 0
JFNE01000088 1,049 0
JFNE01000216 999 0
JFNE01000045 977 0
JFNE01000365 975 0
JFNE01000400 965 0
JFNE01000363 962 0
JFNE01000415 958 0
JFNE01000064 925 0
JFNE01000090 911 0
JFNE01000337 910 0
JFNE01000087 902 0
JFNE01000324 890 0
JFNE01000007 858 0
JFNE01000185 855 0
JFNE01000096 851 0
JFNE01000345 846 0
JFNE01000135 842 0
JFNE01000011 817 0
JFNE01000217 814 0
JFNE01000242 813 0
JFNE01000068 802 0
JFNE01000312 802 0
JFNE01000176 796 0
JFNE01000037 794 0
JFNE01000342 790 0
JFNE01000301 783 0
JFNE01000042 772 0
JFNE01000141 765 0
JFNE01000272 764 0
JFNE01000200 763 0
JFNE01000271 761 0
JFNE01000287 759 0
JFNE01000157 734 0
JFNE01000318 725 0
JFNE01000122 714 0
JFNE01000373 709 0
JFNE01000405 695 0
JFNE01000355 686 0
JFNE01000164 675 0
JFNE01000425 668 0
JFNE01000049 666 0
JFNE01000394 660 0
JFNE01000294 659 0
JFNE01000321 649 0
JFNE01000386 643 0
JFNE01000182 642 0
JFNE01000056 638 0
JFNE01000393 633 0
JFNE01000282 632 0
JFNE01000167 628 0
JFNE01000258 624 0
JFNE01000038 622 0
JFNE01000163 615 0
JFNE01000360 606 0
JFNE01000168 602 0
JFNE01000198 599 0
JFNE01000134 596 0
JFNE01000293 596 0
JFNE01000248 591 0
JFNE01000107 588 0
JFNE01000364 586 0
JFNE01000330 583 0
JFNE01000252 582 0
JFNE01000389 581 0
JFNE01000121 574 0
JFNE01000057 573 0
JFNE01000074 569 0
JFNE01000209 568 0
JFNE01000208 558 0
JFNE01000054 550 0
JFNE01000184 539 0
JFNE01000260 537 0
JFNE01000022 535 0
JFNE01000165 528 0
JFNE01000390 525 0
JFNE01000013 525 0
JFNE01000291 524 0
JFNE01000270 523 0
JFNE01000357 522 0
JFNE01000051 516 0
JFNE01000041 514 0
JFNE01000151 510 0
JFNE01000231 508 0
JFNE01000145 491 0
JFNE01000375 487 0
JFNE01000383 486 0
JFNE01000277 486 0
JFNE01000221 484 0
JFNE01000073 482 0
JFNE01000118 475 0
JFNE01000253 474 0
JFNE01000085 472 0
JFNE01000341 464 0
JFNE01000153 464 0
JFNE01000061 456 0
JFNE01000377 456 0
JFNE01000072 454 0
JFNE01000224 449 0
JFNE01000071 447 0
JFNE01000189 447 0
JFNE01000016 437 0
JFNE01000267 434 0
JFNE01000027 433 0
JFNE01000296 431 0
JFNE01000070 428 0
JFNE01000081 427 0
JFNE01000138 427 0
JFNE01000297 427 0
JFNE01000336 426 0
JFNE01000319 421 0
JFNE01000124 420 0
JFNE01000213 418 0
JFNE01000204 416 0
JFNE01000333 414 0
JFNE01000268 411 0
JFNE01000069 406 0
JFNE01000417 402 0
JFNE01000285 402 0
JFNE01000325 400 0
JFNE01000105 400 0
JFNE01000048 400 0
JFNE01000374 392 0
JFNE01000180 389 0
JFNE01000005 388 0
JFNE01000305 387 0
JFNE01000067 387 0
JFNE01000173 384 0
JFNE01000175 383 0
JFNE01000212 382 0
JFNE01000119 380 0
JFNE01000335 380 0
JFNE01000032 380 0
JFNE01000150 380 0
JFNE01000295 376 0
JFNE01000229 375 0
JFNE01000380 374 0
JFNE01000399 374 0
JFNE01000416 374 0
JFNE01000162 373 0
JFNE01000257 371 0
JFNE01000026 369 0
JFNE01000292 369 0
JFNE01000139 369 0
JFNE01000089 367 0
JFNE01000146 365 0
JFNE01000039 364 0
JFNE01000327 363 0
JFNE01000104 362 0
JFNE01000199 359 0
JFNE01000155 358 0
JFNE01000418 355 0
JFNE01000384 354 0
JFNE01000117 354 0
JFNE01000197 353 0
JFNE01000304 353 0
JFNE01000323 352 0
JFNE01000152 351 0
JFNE01000249 350 0
JFNE01000055 348 0
JFNE01000359 344 0
JFNE01000207 343 0
JFNE01000339 342 0
JFNE01000047 338 0
JFNE01000201 337 0
JFNE01000276 337 0
JFNE01000076 336 0
JFNE01000361 334 0
JFNE01000410 331 0
JFNE01000222 326 0
JFNE01000086 325 0
JFNE01000161 325 0
JFNE01000128 325 0
JFNE01000382 323 0
JFNE01000154 322 0
JFNE01000344 322 0
JFNE01000290 321 0
JFNE01000194 320 0
JFNE01000031 320 0
JFNE01000205 319 0
JFNE01000236 318 0
JFNE01000289 316 0
JFNE01000338 315 0
JFNE01000195 315 0
JFNE01000250 313 0
JFNE01000298 312 0
JFNE01000328 312 0
JFNE01000202 311 0
JFNE01000419 310 0
JFNE01000017 308 0
JFNE01000215 304 0
JFNE01000265 304 0
JFNE01000256 303 0
JFNE01000190 302 0
JFNE01000284 302 0
JFNE01000053 301 0
JFNE01000401 300 0
JFNE01000025 297 0
JFNE01000316 296 0
JFNE01000369 296 0
JFNE01000018 294 0
JFNE01000092 294 0
JFNE01000171 292 0
JFNE01000181 291 0
JFNE01000137 290 0
JFNE01000110 287 0
JFNE01000178 286 0
JFNE01000100 286 0
JFNE01000106 281 0
JFNE01000114 281 0
JFNE01000262 281 0
JFNE01000381 280 0
JFNE01000422 280 0
JFNE01000317 279 0
JFNE01000247 279 0
JFNE01000227 278 0
JFNE01000169 278 0
JFNE01000012 277 0
JFNE01000116 277 0
JFNE01000060 277 0
JFNE01000350 275 0
JFNE01000172 275 0
JFNE01000052 275 0
JFNE01000136 274 0
JFNE01000288 273 0
JFNE01000409 272 0
JFNE01000302 270 0
JFNE01000192 270 0
JFNE01000029 270 0
JFNE01000132 269 0
JFNE01000278 266 0
JFNE01000129 266 0
JFNE01000108 266 0
JFNE01000332 264 0
JFNE01000024 263 0
JFNE01000329 262 0
JFNE01000021 262 0
JFNE01000082 261 0
JFNE01000230 261 0
JFNE01000274 259 0
JFNE01000127 256 0
JFNE01000273 256 0
JFNE01000280 255 0
JFNE01000283 255 0
JFNE01000111 255 0
JFNE01000370 255 0
JFNE01000125 253 0
JFNE01000320 253 0
JFNE01000314 252 0
JFNE01000206 252 0
JFNE01000101 250 0
JFNE01000219 250 0
JFNE01000179 250 0
JFNE01000130 249 0
JFNE01000281 248 0
JFNE01000126 248 0
JFNE01000077 244 0
JFNE01000354 244 0
JFNE01000300 244 0
JFNE01000080 243 0
JFNE01000279 242 0
JFNE01000191 242 0
JFNE01000303 242 0
JFNE01000148 239 0
JFNE01000315 239 0
JFNE01000099 239 0
JFNE01000193 239 0
JFNE01000210 238 0
JFNE01000083 238 0
JFNE01000015 238 0
JFNE01000263 238 0
JFNE01000156 238 0
JFNE01000372 237 0
JFNE01000183 237 0
JFNE01000259 237 0
JFNE01000030 235 0
JFNE01000371 234 0
JFNE01000158 234 0
JFNE01000123 234 0
JFNE01000240 234 0
JFNE01000299 233 0
JFNE01000264 232 0
JFNE01000356 231 0
JFNE01000109 230 0
JFNE01000019 229 0
JFNE01000376 229 0
JFNE01000112 228 0
JFNE01000322 228 0
JFNE01000254 227 0
JFNE01000421 227 0
JFNE01000143 227 0
JFNE01000420 224 0
JFNE01000351 224 0
JFNE01000362 223 0
JFNE01000115 223 0
JFNE01000084 222 0
JFNE01000326 222 0
JFNE01000142 222 0
JFNE01000014 221 0
JFNE01000211 221 0
JFNE01000160 219 0
JFNE01000368 219 0
JFNE01000113 219 0
JFNE01000149 218 0
JFNE01000166 218 0
JFNE01000120 217 0
JFNE01000423 216 0
JFNE01000255 215 0
JFNE01000220 215 0
JFNE01000313 214 0
JFNE01000379 213 0
JFNE01000392 213 0
JFNE01000358 212 0
JFNE01000075 212 0
JFNE01000102 211 0
JFNE01000388 211 0
JFNE01000050 210 0
JFNE01000241 209 0
JFNE01000334 209 0
JFNE01000188 209 0
JFNE01000078 209 0
JFNE01000391 208 0
JFNE01000411 208 0
JFNE01000348 208 0
JFNE01000378 207 0
JFNE01000408 207 0
JFNE01000196 207 0
JFNE01000098 207 0
JFNE01000028 206 0
JFNE01000020 206 0
JFNE01000131 205 0
JFNE01000103 205 0
JFNE01000174 205 0
JFNE01000424 204 0
JFNE01000275 204 0
JFNE01000286 203 0
JFNE01000079 203 0
JFNE01000367 201 0
JFNE01000023 201 0
JFNE01000170 201 0
JFNE01000412 201 0
JFNE01000331 201 0
JFNE01000407 201 0
JFNE01000403 200 0
JFNE01000404 200 0
JFNE01000239 200 0
JFNE01000261 200 0
Total 1,382,477 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635095.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635095.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635095.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635095.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635095.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635095.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635095.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635095.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635095.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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