cyanobase » Prochlorococcus sp. scB245a_518E10

Prochlorococcus sp. scB245a_518E10

Summary

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Data source name GCA_000635075.1
Full name Prochlorococcus sp. scB245a_518E10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNC01000068 325,534 0
JFNC01000345 323,197 0
JFNC01000003 189,484 0
JFNC01000322 97,151 0
JFNC01000001 67,079 0
JFNC01000323 57,564 0
JFNC01000002 21,830 0
JFNC01000324 13,337 0
JFNC01000072 11,763 0
JFNC01000314 10,352 0
JFNC01000067 9,335 0
JFNC01000242 7,928 0
JFNC01000168 5,079 0
JFNC01000340 4,408 0
JFNC01000166 4,162 0
JFNC01000313 4,036 0
JFNC01000004 3,486 0
JFNC01000316 2,877 0
JFNC01000005 2,528 0
JFNC01000069 2,437 0
JFNC01000319 2,127 0
JFNC01000167 2,070 0
JFNC01000332 1,937 0
JFNC01000137 1,924 0
JFNC01000318 1,683 0
JFNC01000141 1,663 0
JFNC01000066 1,567 0
JFNC01000294 1,523 0
JFNC01000139 1,477 0
JFNC01000070 1,471 0
JFNC01000320 1,399 0
JFNC01000177 1,344 0
JFNC01000327 1,251 0
JFNC01000357 1,243 0
JFNC01000173 1,230 0
JFNC01000164 1,172 0
JFNC01000161 1,154 0
JFNC01000148 1,076 0
JFNC01000133 1,064 0
JFNC01000368 1,058 0
JFNC01000130 1,016 0
JFNC01000059 1,014 0
JFNC01000245 1,012 0
JFNC01000206 1,011 0
JFNC01000297 1,000 0
JFNC01000134 987 0
JFNC01000204 971 0
JFNC01000158 960 0
JFNC01000209 958 0
JFNC01000171 949 0
JFNC01000374 943 0
JFNC01000292 943 0
JFNC01000147 916 0
JFNC01000290 908 0
JFNC01000330 904 0
JFNC01000060 900 0
JFNC01000331 898 0
JFNC01000140 893 0
JFNC01000373 879 0
JFNC01000232 875 0
JFNC01000325 858 0
JFNC01000146 854 0
JFNC01000183 820 0
JFNC01000172 812 0
JFNC01000065 806 0
JFNC01000150 782 0
JFNC01000061 780 0
JFNC01000248 752 0
JFNC01000234 750 0
JFNC01000151 726 0
JFNC01000244 724 0
JFNC01000121 722 0
JFNC01000326 719 0
JFNC01000231 718 0
JFNC01000131 711 0
JFNC01000174 705 0
JFNC01000175 704 0
JFNC01000165 700 0
JFNC01000299 669 0
JFNC01000145 661 0
JFNC01000307 661 0
JFNC01000120 658 0
JFNC01000006 651 0
JFNC01000339 645 0
JFNC01000223 643 0
JFNC01000010 640 0
JFNC01000291 638 0
JFNC01000073 636 0
JFNC01000132 635 0
JFNC01000333 628 0
JFNC01000309 628 0
JFNC01000295 615 0
JFNC01000064 610 0
JFNC01000181 601 0
JFNC01000122 600 0
JFNC01000302 595 0
JFNC01000009 584 0
JFNC01000142 582 0
JFNC01000235 580 0
JFNC01000240 574 0
JFNC01000321 568 0
JFNC01000015 566 0
JFNC01000155 560 0
JFNC01000152 556 0
JFNC01000135 547 0
JFNC01000349 547 0
JFNC01000143 540 0
JFNC01000046 539 0
JFNC01000088 528 0
JFNC01000074 527 0
JFNC01000241 527 0
JFNC01000342 522 0
JFNC01000187 516 0
JFNC01000281 514 0
JFNC01000359 508 0
JFNC01000364 506 0
JFNC01000338 504 0
JFNC01000021 500 0
JFNC01000213 490 0
JFNC01000162 483 0
JFNC01000344 476 0
JFNC01000176 468 0
JFNC01000136 462 0
JFNC01000093 462 0
JFNC01000256 461 0
JFNC01000315 461 0
JFNC01000230 461 0
JFNC01000011 451 0
JFNC01000045 450 0
JFNC01000178 445 0
JFNC01000008 440 0
JFNC01000259 440 0
JFNC01000328 440 0
JFNC01000186 440 0
JFNC01000224 439 0
JFNC01000249 428 0
JFNC01000305 423 0
JFNC01000125 423 0
JFNC01000304 422 0
JFNC01000017 421 0
JFNC01000034 418 0
JFNC01000154 411 0
JFNC01000062 408 0
JFNC01000037 407 0
JFNC01000058 405 0
JFNC01000169 405 0
JFNC01000035 402 0
JFNC01000188 399 0
JFNC01000080 397 0
JFNC01000214 396 0
JFNC01000207 396 0
JFNC01000159 396 0
JFNC01000228 394 0
JFNC01000351 390 0
JFNC01000337 390 0
JFNC01000085 390 0
JFNC01000317 389 0
JFNC01000216 387 0
JFNC01000138 387 0
JFNC01000104 385 0
JFNC01000082 383 0
JFNC01000375 383 0
JFNC01000269 382 0
JFNC01000071 379 0
JFNC01000211 376 0
JFNC01000123 376 0
JFNC01000099 375 0
JFNC01000116 375 0
JFNC01000090 372 0
JFNC01000264 371 0
JFNC01000156 369 0
JFNC01000286 367 0
JFNC01000095 366 0
JFNC01000149 363 0
JFNC01000353 363 0
JFNC01000311 363 0
JFNC01000273 362 0
JFNC01000198 362 0
JFNC01000157 361 0
JFNC01000272 360 0
JFNC01000226 359 0
JFNC01000115 359 0
JFNC01000355 358 0
JFNC01000312 355 0
JFNC01000237 355 0
JFNC01000274 354 0
JFNC01000063 353 0
JFNC01000144 349 0
JFNC01000238 348 0
JFNC01000310 347 0
JFNC01000096 346 0
JFNC01000261 345 0
JFNC01000102 345 0
JFNC01000260 345 0
JFNC01000282 344 0
JFNC01000042 343 0
JFNC01000092 343 0
JFNC01000018 342 0
JFNC01000076 341 0
JFNC01000303 337 0
JFNC01000103 337 0
JFNC01000250 335 0
JFNC01000014 335 0
JFNC01000106 333 0
JFNC01000229 332 0
JFNC01000366 329 0
JFNC01000254 329 0
JFNC01000126 329 0
JFNC01000153 324 0
JFNC01000013 323 0
JFNC01000182 320 0
JFNC01000110 320 0
JFNC01000086 318 0
JFNC01000094 316 0
JFNC01000170 315 0
JFNC01000196 315 0
JFNC01000097 314 0
JFNC01000194 314 0
JFNC01000163 314 0
JFNC01000208 313 0
JFNC01000246 312 0
JFNC01000078 312 0
JFNC01000028 312 0
JFNC01000284 311 0
JFNC01000358 310 0
JFNC01000380 309 0
JFNC01000185 309 0
JFNC01000258 308 0
JFNC01000263 307 0
JFNC01000128 305 0
JFNC01000362 305 0
JFNC01000019 302 0
JFNC01000300 301 0
JFNC01000283 299 0
JFNC01000202 297 0
JFNC01000129 297 0
JFNC01000023 296 0
JFNC01000301 295 0
JFNC01000371 294 0
JFNC01000036 294 0
JFNC01000243 291 0
JFNC01000108 291 0
JFNC01000113 290 0
JFNC01000217 290 0
JFNC01000220 288 0
JFNC01000308 286 0
JFNC01000306 285 0
JFNC01000265 285 0
JFNC01000218 283 0
JFNC01000025 283 0
JFNC01000057 282 0
JFNC01000267 282 0
JFNC01000296 281 0
JFNC01000079 277 0
JFNC01000084 276 0
JFNC01000262 275 0
JFNC01000379 275 0
JFNC01000215 275 0
JFNC01000024 275 0
JFNC01000329 275 0
JFNC01000289 274 0
JFNC01000277 274 0
JFNC01000233 274 0
JFNC01000020 273 0
JFNC01000050 273 0
JFNC01000033 272 0
JFNC01000212 272 0
JFNC01000049 270 0
JFNC01000280 269 0
JFNC01000189 268 0
JFNC01000361 267 0
JFNC01000111 267 0
JFNC01000105 266 0
JFNC01000124 266 0
JFNC01000109 266 0
JFNC01000160 263 0
JFNC01000012 262 0
JFNC01000201 262 0
JFNC01000360 261 0
JFNC01000252 261 0
JFNC01000118 257 0
JFNC01000197 256 0
JFNC01000372 256 0
JFNC01000083 254 0
JFNC01000055 254 0
JFNC01000195 253 0
JFNC01000089 251 0
JFNC01000210 248 0
JFNC01000377 248 0
JFNC01000026 248 0
JFNC01000179 247 0
JFNC01000247 247 0
JFNC01000287 247 0
JFNC01000352 246 0
JFNC01000127 245 0
JFNC01000081 245 0
JFNC01000031 244 0
JFNC01000047 243 0
JFNC01000348 243 0
JFNC01000257 243 0
JFNC01000203 243 0
JFNC01000367 242 0
JFNC01000298 241 0
JFNC01000056 240 0
JFNC01000381 240 0
JFNC01000200 239 0
JFNC01000039 239 0
JFNC01000341 239 0
JFNC01000029 238 0
JFNC01000253 237 0
JFNC01000350 236 0
JFNC01000180 236 0
JFNC01000119 236 0
JFNC01000343 236 0
JFNC01000279 235 0
JFNC01000236 234 0
JFNC01000190 233 0
JFNC01000334 233 0
JFNC01000192 233 0
JFNC01000098 233 0
JFNC01000040 232 0
JFNC01000077 232 0
JFNC01000354 231 0
JFNC01000268 231 0
JFNC01000112 231 0
JFNC01000278 230 0
JFNC01000101 229 0
JFNC01000038 229 0
JFNC01000022 228 0
JFNC01000041 228 0
JFNC01000293 227 0
JFNC01000227 227 0
JFNC01000347 225 0
JFNC01000027 224 0
JFNC01000051 224 0
JFNC01000222 223 0
JFNC01000336 222 0
JFNC01000016 222 0
JFNC01000205 221 0
JFNC01000107 220 0
JFNC01000266 219 0
JFNC01000117 218 0
JFNC01000007 218 0
JFNC01000052 217 0
JFNC01000335 217 0
JFNC01000288 217 0
JFNC01000075 217 0
JFNC01000276 216 0
JFNC01000376 216 0
JFNC01000370 216 0
JFNC01000114 216 0
JFNC01000100 215 0
JFNC01000365 215 0
JFNC01000087 214 0
JFNC01000270 213 0
JFNC01000193 213 0
JFNC01000251 213 0
JFNC01000363 212 0
JFNC01000053 211 0
JFNC01000048 211 0
JFNC01000271 210 0
JFNC01000285 210 0
JFNC01000191 209 0
JFNC01000275 209 0
JFNC01000199 208 0
JFNC01000225 207 0
JFNC01000091 207 0
JFNC01000255 205 0
JFNC01000356 204 0
JFNC01000030 204 0
JFNC01000043 204 0
JFNC01000044 204 0
JFNC01000239 203 0
JFNC01000346 202 0
JFNC01000219 202 0
JFNC01000054 201 0
JFNC01000184 201 0
JFNC01000032 200 0
JFNC01000378 181 0
JFNC01000369 166 0
JFNC01000221 141 0
Total 1,327,384 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635075.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635075.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635075.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635075.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635075.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635075.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635075.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635075.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635075.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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