cyanobase » Prochlorococcus sp. scB245a_518A6

Prochlorococcus sp. scB245a_518A6

Summary

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Data source name GCA_000635055.1
Full name Prochlorococcus sp. scB245a_518A6 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNA01000160 168,885 0
JFNA01000099 141,961 0
JFNA01000223 92,191 0
JFNA01000232 89,033 0
JFNA01000041 66,411 0
JFNA01000243 56,435 0
JFNA01000072 49,598 0
JFNA01000001 47,875 0
JFNA01000042 46,589 0
JFNA01000074 45,751 0
JFNA01000112 44,637 0
JFNA01000117 42,093 0
JFNA01000234 41,377 0
JFNA01000238 34,676 0
JFNA01000004 31,492 0
JFNA01000075 27,965 0
JFNA01000186 26,741 0
JFNA01000158 20,732 0
JFNA01000043 17,162 0
JFNA01000137 15,927 0
JFNA01000242 15,669 0
JFNA01000159 13,236 0
JFNA01000239 11,416 0
JFNA01000198 10,461 0
JFNA01000222 9,609 0
JFNA01000241 8,754 0
JFNA01000070 8,073 0
JFNA01000240 7,048 0
JFNA01000095 6,911 0
JFNA01000268 6,462 0
JFNA01000076 5,950 0
JFNA01000098 5,866 0
JFNA01000100 5,757 0
JFNA01000253 5,453 0
JFNA01000244 5,335 0
JFNA01000136 5,094 0
JFNA01000224 4,918 0
JFNA01000002 4,331 0
JFNA01000233 3,555 0
JFNA01000003 3,538 0
JFNA01000101 3,331 0
JFNA01000073 2,996 0
JFNA01000113 2,627 0
JFNA01000067 2,394 0
JFNA01000111 2,266 0
JFNA01000211 2,014 0
JFNA01000236 2,010 0
JFNA01000178 2,003 0
JFNA01000134 1,826 0
JFNA01000235 1,689 0
JFNA01000096 1,595 0
JFNA01000131 1,539 0
JFNA01000157 1,521 0
JFNA01000071 1,394 0
JFNA01000199 1,323 0
JFNA01000068 1,285 0
JFNA01000129 1,281 0
JFNA01000103 1,268 0
JFNA01000171 1,126 0
JFNA01000257 1,084 0
JFNA01000066 1,077 0
JFNA01000226 1,017 0
JFNA01000246 1,007 0
JFNA01000114 1,006 0
JFNA01000133 1,000 0
JFNA01000196 999 0
JFNA01000180 995 0
JFNA01000020 978 0
JFNA01000093 944 0
JFNA01000102 918 0
JFNA01000021 915 0
JFNA01000269 903 0
JFNA01000201 884 0
JFNA01000255 840 0
JFNA01000161 833 0
JFNA01000156 825 0
JFNA01000258 794 0
JFNA01000104 773 0
JFNA01000065 695 0
JFNA01000202 684 0
JFNA01000254 656 0
JFNA01000148 623 0
JFNA01000256 600 0
JFNA01000040 592 0
JFNA01000259 585 0
JFNA01000193 584 0
JFNA01000053 582 0
JFNA01000015 581 0
JFNA01000017 577 0
JFNA01000166 561 0
JFNA01000195 552 0
JFNA01000026 528 0
JFNA01000024 524 0
JFNA01000128 523 0
JFNA01000154 522 0
JFNA01000167 499 0
JFNA01000045 497 0
JFNA01000277 495 0
JFNA01000213 485 0
JFNA01000264 482 0
JFNA01000185 481 0
JFNA01000265 471 0
JFNA01000155 461 0
JFNA01000218 453 0
JFNA01000037 452 0
JFNA01000194 452 0
JFNA01000081 451 0
JFNA01000079 450 0
JFNA01000146 421 0
JFNA01000219 416 0
JFNA01000039 415 0
JFNA01000108 413 0
JFNA01000115 412 0
JFNA01000179 408 0
JFNA01000023 406 0
JFNA01000261 404 0
JFNA01000080 404 0
JFNA01000208 403 0
JFNA01000228 399 0
JFNA01000170 399 0
JFNA01000164 396 0
JFNA01000245 392 0
JFNA01000022 389 0
JFNA01000207 388 0
JFNA01000019 381 0
JFNA01000197 380 0
JFNA01000109 380 0
JFNA01000169 377 0
JFNA01000044 373 0
JFNA01000162 372 0
JFNA01000203 372 0
JFNA01000077 369 0
JFNA01000165 367 0
JFNA01000260 366 0
JFNA01000145 365 0
JFNA01000152 365 0
JFNA01000272 365 0
JFNA01000055 358 0
JFNA01000047 353 0
JFNA01000127 353 0
JFNA01000204 352 0
JFNA01000105 351 0
JFNA01000030 351 0
JFNA01000122 348 0
JFNA01000142 346 0
JFNA01000147 346 0
JFNA01000262 339 0
JFNA01000029 338 0
JFNA01000056 337 0
JFNA01000049 334 0
JFNA01000275 333 0
JFNA01000013 330 0
JFNA01000107 326 0
JFNA01000132 324 0
JFNA01000227 317 0
JFNA01000124 316 0
JFNA01000181 314 0
JFNA01000125 313 0
JFNA01000086 311 0
JFNA01000151 310 0
JFNA01000116 307 0
JFNA01000230 306 0
JFNA01000031 303 0
JFNA01000173 303 0
JFNA01000035 303 0
JFNA01000163 299 0
JFNA01000139 299 0
JFNA01000247 298 0
JFNA01000014 296 0
JFNA01000187 296 0
JFNA01000153 296 0
JFNA01000229 295 0
JFNA01000058 294 0
JFNA01000210 293 0
JFNA01000046 293 0
JFNA01000140 289 0
JFNA01000150 288 0
JFNA01000168 288 0
JFNA01000063 287 0
JFNA01000078 287 0
JFNA01000028 285 0
JFNA01000138 283 0
JFNA01000276 282 0
JFNA01000270 281 0
JFNA01000083 281 0
JFNA01000217 280 0
JFNA01000215 280 0
JFNA01000174 280 0
JFNA01000225 280 0
JFNA01000209 279 0
JFNA01000144 279 0
JFNA01000221 279 0
JFNA01000051 277 0
JFNA01000135 274 0
JFNA01000052 273 0
JFNA01000273 273 0
JFNA01000183 271 0
JFNA01000121 270 0
JFNA01000094 269 0
JFNA01000263 268 0
JFNA01000172 268 0
JFNA01000214 266 0
JFNA01000216 265 0
JFNA01000054 264 0
JFNA01000182 264 0
JFNA01000062 263 0
JFNA01000088 262 0
JFNA01000025 261 0
JFNA01000184 260 0
JFNA01000006 259 0
JFNA01000118 258 0
JFNA01000191 257 0
JFNA01000060 257 0
JFNA01000267 256 0
JFNA01000249 256 0
JFNA01000106 254 0
JFNA01000200 253 0
JFNA01000057 251 0
JFNA01000036 248 0
JFNA01000141 246 0
JFNA01000231 245 0
JFNA01000027 245 0
JFNA01000018 245 0
JFNA01000089 243 0
JFNA01000097 242 0
JFNA01000091 242 0
JFNA01000274 240 0
JFNA01000190 239 0
JFNA01000251 239 0
JFNA01000130 239 0
JFNA01000048 236 0
JFNA01000011 236 0
JFNA01000119 236 0
JFNA01000212 234 0
JFNA01000120 234 0
JFNA01000126 233 0
JFNA01000266 233 0
JFNA01000032 231 0
JFNA01000007 230 0
JFNA01000084 230 0
JFNA01000034 230 0
JFNA01000176 230 0
JFNA01000192 229 0
JFNA01000009 228 0
JFNA01000008 228 0
JFNA01000123 227 0
JFNA01000177 226 0
JFNA01000110 226 0
JFNA01000189 224 0
JFNA01000188 222 0
JFNA01000205 221 0
JFNA01000005 219 0
JFNA01000064 219 0
JFNA01000090 219 0
JFNA01000250 218 0
JFNA01000271 216 0
JFNA01000252 216 0
JFNA01000175 214 0
JFNA01000012 213 0
JFNA01000248 211 0
JFNA01000149 211 0
JFNA01000085 211 0
JFNA01000050 210 0
JFNA01000143 210 0
JFNA01000237 207 0
JFNA01000220 206 0
JFNA01000206 206 0
JFNA01000010 206 0
JFNA01000082 206 0
JFNA01000069 205 0
JFNA01000092 205 0
JFNA01000059 203 0
JFNA01000038 203 0
JFNA01000087 203 0
JFNA01000033 201 0
JFNA01000016 161 0
JFNA01000278 152 0
JFNA01000061 130 0
Total 1,372,698 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000635055.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635055.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635055.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635055.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635055.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635055.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635055.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635055.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635055.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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