cyanobase » Prochlorococcus sp. scB243_498I20

Prochlorococcus sp. scB243_498I20

Summary

? | +/- | Top
Data source name GCA_000635015.1
Full name Prochlorococcus sp. scB243_498I20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFMR01000045 540,899 0
JFMR01000036 252,279 0
JFMR01000108 128,822 0
JFMR01000114 120,238 0
JFMR01000047 105,366 0
JFMR01000049 82,537 0
JFMR01000040 54,628 0
JFMR01000116 32,898 0
JFMR01000112 29,390 0
JFMR01000050 25,200 0
JFMR01000046 24,878 0
JFMR01000041 22,409 0
JFMR01000156 19,659 0
JFMR01000107 16,032 0
JFMR01000127 10,402 0
JFMR01000054 9,750 0
JFMR01000106 9,488 0
JFMR01000042 7,339 0
JFMR01000051 7,322 0
JFMR01000113 5,911 0
JFMR01000019 5,572 0
JFMR01000115 3,012 0
JFMR01000053 2,967 0
JFMR01000105 2,303 0
JFMR01000043 1,741 0
JFMR01000126 1,623 0
JFMR01000020 1,457 0
JFMR01000138 1,445 0
JFMR01000052 1,413 0
JFMR01000140 1,211 0
JFMR01000038 1,203 0
JFMR01000018 1,168 0
JFMR01000056 1,113 0
JFMR01000037 1,091 0
JFMR01000142 1,052 0
JFMR01000014 1,006 0
JFMR01000035 952 0
JFMR01000004 948 0
JFMR01000157 931 0
JFMR01000159 916 0
JFMR01000166 881 0
JFMR01000021 875 0
JFMR01000058 837 0
JFMR01000026 809 0
JFMR01000017 807 0
JFMR01000139 799 0
JFMR01000098 791 0
JFMR01000096 745 0
JFMR01000039 733 0
JFMR01000143 701 0
JFMR01000100 694 0
JFMR01000164 680 0
JFMR01000087 655 0
JFMR01000060 653 0
JFMR01000055 641 0
JFMR01000150 639 0
JFMR01000141 591 0
JFMR01000022 584 0
JFMR01000145 563 0
JFMR01000102 557 0
JFMR01000064 554 0
JFMR01000030 553 0
JFMR01000103 540 0
JFMR01000081 534 0
JFMR01000023 530 0
JFMR01000007 523 0
JFMR01000024 522 0
JFMR01000095 511 0
JFMR01000048 510 0
JFMR01000146 501 0
JFMR01000119 498 0
JFMR01000132 493 0
JFMR01000001 482 0
JFMR01000063 481 0
JFMR01000069 480 0
JFMR01000057 479 0
JFMR01000002 475 0
JFMR01000003 465 0
JFMR01000061 465 0
JFMR01000163 464 0
JFMR01000009 462 0
JFMR01000010 461 0
JFMR01000144 455 0
JFMR01000086 453 0
JFMR01000070 447 0
JFMR01000093 440 0
JFMR01000065 425 0
JFMR01000160 410 0
JFMR01000134 408 0
JFMR01000074 408 0
JFMR01000152 408 0
JFMR01000147 407 0
JFMR01000044 405 0
JFMR01000118 400 0
JFMR01000129 393 0
JFMR01000148 392 0
JFMR01000082 390 0
JFMR01000028 385 0
JFMR01000101 384 0
JFMR01000011 382 0
JFMR01000154 375 0
JFMR01000149 373 0
JFMR01000125 371 0
JFMR01000089 364 0
JFMR01000062 359 0
JFMR01000099 356 0
JFMR01000151 354 0
JFMR01000034 353 0
JFMR01000104 352 0
JFMR01000109 352 0
JFMR01000072 343 0
JFMR01000094 339 0
JFMR01000130 336 0
JFMR01000033 332 0
JFMR01000059 329 0
JFMR01000006 320 0
JFMR01000008 310 0
JFMR01000066 309 0
JFMR01000155 305 0
JFMR01000013 302 0
JFMR01000167 301 0
JFMR01000067 299 0
JFMR01000120 297 0
JFMR01000153 294 0
JFMR01000012 293 0
JFMR01000025 290 0
JFMR01000111 288 0
JFMR01000083 287 0
JFMR01000076 285 0
JFMR01000161 282 0
JFMR01000084 281 0
JFMR01000162 281 0
JFMR01000165 280 0
JFMR01000031 280 0
JFMR01000015 274 0
JFMR01000131 273 0
JFMR01000123 272 0
JFMR01000079 270 0
JFMR01000090 270 0
JFMR01000136 265 0
JFMR01000080 263 0
JFMR01000128 257 0
JFMR01000071 254 0
JFMR01000005 248 0
JFMR01000027 247 0
JFMR01000097 246 0
JFMR01000117 242 0
JFMR01000016 241 0
JFMR01000137 241 0
JFMR01000068 233 0
JFMR01000110 230 0
JFMR01000073 230 0
JFMR01000122 230 0
JFMR01000092 229 0
JFMR01000135 226 0
JFMR01000158 225 0
JFMR01000088 220 0
JFMR01000124 218 0
JFMR01000078 217 0
JFMR01000075 215 0
JFMR01000029 215 0
JFMR01000133 212 0
JFMR01000077 212 0
JFMR01000032 210 0
JFMR01000091 208 0
JFMR01000121 208 0
JFMR01000085 201 0
Total 1,589,855 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000635015.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000635015.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000635015.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000635015.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000635015.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000635015.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000635015.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000635015.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000635015.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer