cyanobase » Prochlorococcus sp. scB243_498C16

Prochlorococcus sp. scB243_498C16

Summary

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Data source name GCA_000634995.1
Full name Prochlorococcus sp. scB243_498C16 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMO01000161 357,509 0
JFMO01000160 206,468 0
JFMO01000232 134,534 0
JFMO01000019 114,177 0
JFMO01000190 96,483 0
JFMO01000167 72,497 0
JFMO01000158 48,265 0
JFMO01000001 42,359 0
JFMO01000181 41,174 0
JFMO01000159 33,678 0
JFMO01000157 23,992 0
JFMO01000002 20,637 0
JFMO01000201 20,522 0
JFMO01000188 16,674 0
JFMO01000156 13,901 0
JFMO01000182 13,177 0
JFMO01000024 10,960 0
JFMO01000183 9,884 0
JFMO01000173 9,471 0
JFMO01000018 7,741 0
JFMO01000164 7,300 0
JFMO01000193 7,163 0
JFMO01000187 6,858 0
JFMO01000185 6,642 0
JFMO01000162 4,878 0
JFMO01000245 4,733 0
JFMO01000175 3,951 0
JFMO01000020 3,159 0
JFMO01000189 2,405 0
JFMO01000192 2,390 0
JFMO01000247 2,253 0
JFMO01000180 2,184 0
JFMO01000268 2,083 0
JFMO01000172 2,020 0
JFMO01000155 1,865 0
JFMO01000169 1,849 0
JFMO01000096 1,843 0
JFMO01000216 1,838 0
JFMO01000016 1,795 0
JFMO01000186 1,624 0
JFMO01000165 1,581 0
JFMO01000163 1,493 0
JFMO01000150 1,485 0
JFMO01000235 1,380 0
JFMO01000067 1,351 0
JFMO01000026 1,342 0
JFMO01000199 1,294 0
JFMO01000203 1,245 0
JFMO01000197 1,227 0
JFMO01000209 1,225 0
JFMO01000153 1,216 0
JFMO01000212 1,181 0
JFMO01000058 1,170 0
JFMO01000025 1,127 0
JFMO01000249 1,080 0
JFMO01000207 1,075 0
JFMO01000177 1,072 0
JFMO01000087 1,068 0
JFMO01000086 1,035 0
JFMO01000250 994 0
JFMO01000246 964 0
JFMO01000090 963 0
JFMO01000027 955 0
JFMO01000248 947 0
JFMO01000211 931 0
JFMO01000171 921 0
JFMO01000233 914 0
JFMO01000142 900 0
JFMO01000261 874 0
JFMO01000174 861 0
JFMO01000102 859 0
JFMO01000100 839 0
JFMO01000104 824 0
JFMO01000254 821 0
JFMO01000255 819 0
JFMO01000196 818 0
JFMO01000260 815 0
JFMO01000022 814 0
JFMO01000054 789 0
JFMO01000120 756 0
JFMO01000152 755 0
JFMO01000033 745 0
JFMO01000179 736 0
JFMO01000258 724 0
JFMO01000017 722 0
JFMO01000251 715 0
JFMO01000051 713 0
JFMO01000011 708 0
JFMO01000136 707 0
JFMO01000200 695 0
JFMO01000066 694 0
JFMO01000014 692 0
JFMO01000252 686 0
JFMO01000008 685 0
JFMO01000178 684 0
JFMO01000073 677 0
JFMO01000176 657 0
JFMO01000221 644 0
JFMO01000194 638 0
JFMO01000052 638 0
JFMO01000101 629 0
JFMO01000281 626 0
JFMO01000202 610 0
JFMO01000006 606 0
JFMO01000103 590 0
JFMO01000272 588 0
JFMO01000015 563 0
JFMO01000224 563 0
JFMO01000239 558 0
JFMO01000222 553 0
JFMO01000049 534 0
JFMO01000234 529 0
JFMO01000088 528 0
JFMO01000154 526 0
JFMO01000121 498 0
JFMO01000195 480 0
JFMO01000083 480 0
JFMO01000259 471 0
JFMO01000256 469 0
JFMO01000099 456 0
JFMO01000042 454 0
JFMO01000060 442 0
JFMO01000168 439 0
JFMO01000191 436 0
JFMO01000275 436 0
JFMO01000262 432 0
JFMO01000279 430 0
JFMO01000226 429 0
JFMO01000009 427 0
JFMO01000130 423 0
JFMO01000062 423 0
JFMO01000032 421 0
JFMO01000135 421 0
JFMO01000219 416 0
JFMO01000091 415 0
JFMO01000215 414 0
JFMO01000137 414 0
JFMO01000149 414 0
JFMO01000106 413 0
JFMO01000205 410 0
JFMO01000280 404 0
JFMO01000065 396 0
JFMO01000131 392 0
JFMO01000132 387 0
JFMO01000097 382 0
JFMO01000080 382 0
JFMO01000075 375 0
JFMO01000077 374 0
JFMO01000082 370 0
JFMO01000206 368 0
JFMO01000079 367 0
JFMO01000023 363 0
JFMO01000278 362 0
JFMO01000151 361 0
JFMO01000005 358 0
JFMO01000115 357 0
JFMO01000129 355 0
JFMO01000003 353 0
JFMO01000147 349 0
JFMO01000119 348 0
JFMO01000274 346 0
JFMO01000146 346 0
JFMO01000056 340 0
JFMO01000253 338 0
JFMO01000122 338 0
JFMO01000043 335 0
JFMO01000109 331 0
JFMO01000263 331 0
JFMO01000204 327 0
JFMO01000127 327 0
JFMO01000236 326 0
JFMO01000072 321 0
JFMO01000030 319 0
JFMO01000061 318 0
JFMO01000231 315 0
JFMO01000055 315 0
JFMO01000140 314 0
JFMO01000227 312 0
JFMO01000128 311 0
JFMO01000114 310 0
JFMO01000095 308 0
JFMO01000098 307 0
JFMO01000148 305 0
JFMO01000074 304 0
JFMO01000273 303 0
JFMO01000084 302 0
JFMO01000124 300 0
JFMO01000267 298 0
JFMO01000094 297 0
JFMO01000225 291 0
JFMO01000046 291 0
JFMO01000257 290 0
JFMO01000144 289 0
JFMO01000238 287 0
JFMO01000028 285 0
JFMO01000089 282 0
JFMO01000036 282 0
JFMO01000141 281 0
JFMO01000037 280 0
JFMO01000208 279 0
JFMO01000013 278 0
JFMO01000264 275 0
JFMO01000125 275 0
JFMO01000107 274 0
JFMO01000228 273 0
JFMO01000242 270 0
JFMO01000105 269 0
JFMO01000170 269 0
JFMO01000076 269 0
JFMO01000134 265 0
JFMO01000123 263 0
JFMO01000139 262 0
JFMO01000266 262 0
JFMO01000241 262 0
JFMO01000070 261 0
JFMO01000108 260 0
JFMO01000029 260 0
JFMO01000092 257 0
JFMO01000040 256 0
JFMO01000218 254 0
JFMO01000198 253 0
JFMO01000012 253 0
JFMO01000143 253 0
JFMO01000118 252 0
JFMO01000271 251 0
JFMO01000223 251 0
JFMO01000063 251 0
JFMO01000059 250 0
JFMO01000277 248 0
JFMO01000041 247 0
JFMO01000110 246 0
JFMO01000034 244 0
JFMO01000244 243 0
JFMO01000230 243 0
JFMO01000166 242 0
JFMO01000240 242 0
JFMO01000069 240 0
JFMO01000229 240 0
JFMO01000237 240 0
JFMO01000113 238 0
JFMO01000213 238 0
JFMO01000217 238 0
JFMO01000050 237 0
JFMO01000010 235 0
JFMO01000138 235 0
JFMO01000045 233 0
JFMO01000269 232 0
JFMO01000071 232 0
JFMO01000265 230 0
JFMO01000210 229 0
JFMO01000068 228 0
JFMO01000112 227 0
JFMO01000243 226 0
JFMO01000081 225 0
JFMO01000126 224 0
JFMO01000064 222 0
JFMO01000220 221 0
JFMO01000035 220 0
JFMO01000039 220 0
JFMO01000117 219 0
JFMO01000048 218 0
JFMO01000078 218 0
JFMO01000038 218 0
JFMO01000276 217 0
JFMO01000047 216 0
JFMO01000057 215 0
JFMO01000007 213 0
JFMO01000093 213 0
JFMO01000044 209 0
JFMO01000111 208 0
JFMO01000214 207 0
JFMO01000116 206 0
JFMO01000004 206 0
JFMO01000145 206 0
JFMO01000053 205 0
JFMO01000270 205 0
JFMO01000184 203 0
JFMO01000021 203 0
JFMO01000031 203 0
JFMO01000133 201 0
JFMO01000085 200 0
Total 1,477,228 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634995.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634995.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634995.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634995.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634995.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634995.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634995.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634995.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634995.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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