cyanobase » Prochlorococcus sp. scB243_498B22

Prochlorococcus sp. scB243_498B22

Summary

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Data source name GCA_000634975.1
Full name Prochlorococcus sp. scB243_498B22 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMM01000041 395,727 0
JFMM01000001 278,042 0
JFMM01000058 126,314 0
JFMM01000151 110,790 0
JFMM01000040 94,504 0
JFMM01000149 83,135 0
JFMM01000113 79,844 0
JFMM01000148 52,433 0
JFMM01000146 40,005 0
JFMM01000039 22,569 0
JFMM01000114 19,300 0
JFMM01000060 16,957 0
JFMM01000009 15,628 0
JFMM01000042 13,330 0
JFMM01000075 10,524 0
JFMM01000002 7,494 0
JFMM01000059 5,721 0
JFMM01000096 4,863 0
JFMM01000145 3,995 0
JFMM01000150 3,427 0
JFMM01000003 3,217 0
JFMM01000006 2,742 0
JFMM01000061 2,652 0
JFMM01000155 2,361 0
JFMM01000050 2,336 0
JFMM01000038 2,163 0
JFMM01000004 2,153 0
JFMM01000156 2,037 0
JFMM01000153 1,839 0
JFMM01000171 1,694 0
JFMM01000103 1,535 0
JFMM01000097 1,332 0
JFMM01000037 1,293 0
JFMM01000051 1,283 0
JFMM01000036 1,258 0
JFMM01000099 1,246 0
JFMM01000172 1,067 0
JFMM01000168 1,041 0
JFMM01000100 1,014 0
JFMM01000152 1,009 0
JFMM01000052 998 0
JFMM01000043 990 0
JFMM01000045 984 0
JFMM01000115 973 0
JFMM01000017 899 0
JFMM01000166 871 0
JFMM01000098 798 0
JFMM01000015 755 0
JFMM01000062 744 0
JFMM01000138 724 0
JFMM01000012 712 0
JFMM01000065 694 0
JFMM01000129 690 0
JFMM01000044 670 0
JFMM01000140 660 0
JFMM01000164 651 0
JFMM01000122 644 0
JFMM01000048 641 0
JFMM01000074 625 0
JFMM01000154 593 0
JFMM01000136 572 0
JFMM01000080 563 0
JFMM01000117 552 0
JFMM01000159 551 0
JFMM01000008 537 0
JFMM01000007 516 0
JFMM01000167 512 0
JFMM01000010 506 0
JFMM01000163 486 0
JFMM01000102 486 0
JFMM01000160 486 0
JFMM01000127 485 0
JFMM01000110 479 0
JFMM01000068 471 0
JFMM01000057 449 0
JFMM01000073 449 0
JFMM01000142 445 0
JFMM01000029 440 0
JFMM01000067 437 0
JFMM01000089 436 0
JFMM01000081 435 0
JFMM01000016 432 0
JFMM01000121 429 0
JFMM01000049 419 0
JFMM01000124 419 0
JFMM01000032 419 0
JFMM01000072 416 0
JFMM01000093 401 0
JFMM01000011 398 0
JFMM01000130 394 0
JFMM01000143 394 0
JFMM01000106 389 0
JFMM01000162 382 0
JFMM01000135 378 0
JFMM01000128 370 0
JFMM01000132 369 0
JFMM01000182 368 0
JFMM01000021 359 0
JFMM01000112 359 0
JFMM01000092 359 0
JFMM01000094 359 0
JFMM01000046 355 0
JFMM01000086 348 0
JFMM01000022 344 0
JFMM01000180 342 0
JFMM01000095 339 0
JFMM01000085 339 0
JFMM01000014 338 0
JFMM01000177 337 0
JFMM01000104 332 0
JFMM01000018 329 0
JFMM01000090 326 0
JFMM01000076 322 0
JFMM01000055 315 0
JFMM01000169 314 0
JFMM01000105 314 0
JFMM01000033 313 0
JFMM01000165 311 0
JFMM01000066 310 0
JFMM01000069 307 0
JFMM01000126 306 0
JFMM01000101 297 0
JFMM01000109 295 0
JFMM01000030 294 0
JFMM01000111 294 0
JFMM01000020 293 0
JFMM01000161 291 0
JFMM01000118 288 0
JFMM01000084 288 0
JFMM01000091 287 0
JFMM01000082 285 0
JFMM01000064 285 0
JFMM01000175 280 0
JFMM01000170 275 0
JFMM01000063 271 0
JFMM01000024 269 0
JFMM01000028 269 0
JFMM01000123 266 0
JFMM01000116 263 0
JFMM01000056 261 0
JFMM01000078 260 0
JFMM01000134 260 0
JFMM01000133 259 0
JFMM01000173 258 0
JFMM01000184 258 0
JFMM01000185 257 0
JFMM01000087 256 0
JFMM01000158 255 0
JFMM01000025 254 0
JFMM01000027 254 0
JFMM01000187 250 0
JFMM01000178 250 0
JFMM01000137 247 0
JFMM01000013 244 0
JFMM01000035 244 0
JFMM01000077 243 0
JFMM01000181 243 0
JFMM01000174 242 0
JFMM01000131 238 0
JFMM01000083 235 0
JFMM01000176 235 0
JFMM01000053 235 0
JFMM01000107 233 0
JFMM01000120 232 0
JFMM01000088 230 0
JFMM01000019 230 0
JFMM01000119 228 0
JFMM01000108 227 0
JFMM01000144 227 0
JFMM01000125 224 0
JFMM01000079 224 0
JFMM01000005 223 0
JFMM01000147 222 0
JFMM01000034 221 0
JFMM01000070 220 0
JFMM01000179 219 0
JFMM01000186 219 0
JFMM01000183 218 0
JFMM01000023 216 0
JFMM01000047 214 0
JFMM01000141 212 0
JFMM01000031 212 0
JFMM01000139 210 0
JFMM01000071 205 0
JFMM01000026 205 0
JFMM01000054 200 0
JFMM01000157 200 0
Total 1,476,136 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634975.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634975.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634975.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634975.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634975.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634975.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634975.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634975.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634975.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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