cyanobase » Prochlorococcus sp. scB243_497N18

Prochlorococcus sp. scB243_497N18

Summary

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Data source name GCA_000634955.1
Full name Prochlorococcus sp. scB243_497N18 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMK01000104 104,504 0
JFMK01000143 84,107 0
JFMK01000102 83,330 0
JFMK01000044 81,902 0
JFMK01000048 64,593 0
JFMK01000045 63,082 0
JFMK01000121 40,027 0
JFMK01000049 33,279 0
JFMK01000046 14,091 0
JFMK01000047 13,132 0
JFMK01000126 8,927 0
JFMK01000055 4,232 0
JFMK01000051 3,991 0
JFMK01000054 3,782 0
JFMK01000101 3,154 0
JFMK01000147 2,611 0
JFMK01000043 2,590 0
JFMK01000108 2,069 0
JFMK01000122 1,748 0
JFMK01000056 1,508 0
JFMK01000081 1,492 0
JFMK01000110 1,377 0
JFMK01000059 1,367 0
JFMK01000105 1,202 0
JFMK01000026 1,159 0
JFMK01000123 1,158 0
JFMK01000146 1,115 0
JFMK01000064 1,098 0
JFMK01000103 1,087 0
JFMK01000083 1,053 0
JFMK01000141 917 0
JFMK01000115 907 0
JFMK01000052 899 0
JFMK01000016 854 0
JFMK01000120 792 0
JFMK01000112 762 0
JFMK01000094 751 0
JFMK01000028 744 0
JFMK01000079 686 0
JFMK01000148 664 0
JFMK01000107 657 0
JFMK01000080 653 0
JFMK01000144 635 0
JFMK01000053 611 0
JFMK01000119 603 0
JFMK01000095 584 0
JFMK01000033 551 0
JFMK01000063 541 0
JFMK01000038 539 0
JFMK01000061 537 0
JFMK01000096 524 0
JFMK01000149 521 0
JFMK01000042 513 0
JFMK01000114 502 0
JFMK01000075 491 0
JFMK01000124 472 0
JFMK01000032 465 0
JFMK01000085 464 0
JFMK01000040 464 0
JFMK01000060 461 0
JFMK01000099 456 0
JFMK01000074 449 0
JFMK01000092 447 0
JFMK01000057 438 0
JFMK01000106 432 0
JFMK01000082 423 0
JFMK01000150 422 0
JFMK01000015 420 0
JFMK01000037 412 0
JFMK01000098 412 0
JFMK01000152 412 0
JFMK01000097 407 0
JFMK01000134 405 0
JFMK01000034 399 0
JFMK01000011 383 0
JFMK01000090 381 0
JFMK01000035 369 0
JFMK01000072 365 0
JFMK01000041 349 0
JFMK01000025 349 0
JFMK01000109 348 0
JFMK01000154 348 0
JFMK01000069 348 0
JFMK01000022 348 0
JFMK01000138 347 0
JFMK01000058 337 0
JFMK01000070 322 0
JFMK01000151 319 0
JFMK01000019 314 0
JFMK01000132 311 0
JFMK01000130 310 0
JFMK01000133 308 0
JFMK01000111 303 0
JFMK01000158 301 0
JFMK01000088 301 0
JFMK01000142 300 0
JFMK01000117 298 0
JFMK01000086 297 0
JFMK01000014 297 0
JFMK01000023 288 0
JFMK01000135 287 0
JFMK01000006 285 0
JFMK01000065 285 0
JFMK01000050 283 0
JFMK01000062 283 0
JFMK01000077 278 0
JFMK01000002 277 0
JFMK01000087 271 0
JFMK01000076 271 0
JFMK01000012 270 0
JFMK01000159 268 0
JFMK01000078 267 0
JFMK01000066 263 0
JFMK01000007 259 0
JFMK01000100 258 0
JFMK01000027 257 0
JFMK01000030 249 0
JFMK01000093 248 0
JFMK01000031 246 0
JFMK01000021 246 0
JFMK01000127 241 0
JFMK01000029 233 0
JFMK01000118 229 0
JFMK01000073 229 0
JFMK01000091 227 0
JFMK01000020 226 0
JFMK01000136 226 0
JFMK01000036 225 0
JFMK01000129 225 0
JFMK01000008 224 0
JFMK01000009 223 0
JFMK01000113 223 0
JFMK01000155 222 0
JFMK01000140 221 0
JFMK01000010 221 0
JFMK01000003 220 0
JFMK01000067 219 0
JFMK01000084 218 0
JFMK01000068 216 0
JFMK01000013 215 0
JFMK01000131 214 0
JFMK01000039 214 0
JFMK01000116 212 0
JFMK01000125 211 0
JFMK01000137 211 0
JFMK01000017 210 0
JFMK01000001 207 0
JFMK01000145 205 0
JFMK01000089 205 0
JFMK01000071 205 0
JFMK01000156 204 0
JFMK01000024 203 0
JFMK01000004 202 0
JFMK01000018 202 0
JFMK01000153 201 0
JFMK01000005 201 0
JFMK01000128 201 0
JFMK01000157 201 0
JFMK01000139 195 0
Total 675,744 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634955.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634955.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634955.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634955.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634955.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634955.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634955.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634955.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634955.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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