cyanobase » Prochlorococcus sp. scB243_496G15

Prochlorococcus sp. scB243_496G15

Summary

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Data source name GCA_000634915.1
Full name Prochlorococcus sp. scB243_496G15 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFME01000246 177,373 0
JFME01000001 124,675 0
JFME01000245 124,064 0
JFME01000012 104,331 0
JFME01000177 101,779 0
JFME01000146 93,915 0
JFME01000179 80,115 0
JFME01000159 77,128 0
JFME01000248 69,987 0
JFME01000243 53,145 0
JFME01000172 47,730 0
JFME01000244 30,868 0
JFME01000242 21,043 0
JFME01000160 17,301 0
JFME01000249 16,507 0
JFME01000178 15,873 0
JFME01000173 13,037 0
JFME01000247 11,802 0
JFME01000228 11,083 0
JFME01000227 10,973 0
JFME01000002 9,655 0
JFME01000166 6,143 0
JFME01000169 5,362 0
JFME01000011 4,911 0
JFME01000170 4,470 0
JFME01000226 3,667 0
JFME01000176 3,397 0
JFME01000165 3,102 0
JFME01000047 2,787 0
JFME01000145 2,398 0
JFME01000040 2,297 0
JFME01000181 2,071 0
JFME01000034 2,038 0
JFME01000163 1,813 0
JFME01000041 1,700 0
JFME01000054 1,628 0
JFME01000183 1,614 0
JFME01000167 1,614 0
JFME01000109 1,611 0
JFME01000058 1,567 0
JFME01000164 1,536 0
JFME01000174 1,416 0
JFME01000189 1,376 0
JFME01000048 1,336 0
JFME01000241 1,316 0
JFME01000191 1,211 0
JFME01000155 1,165 0
JFME01000042 1,143 0
JFME01000188 1,131 0
JFME01000090 1,124 0
JFME01000043 1,102 0
JFME01000193 1,101 0
JFME01000149 1,025 0
JFME01000186 1,020 0
JFME01000060 983 0
JFME01000094 981 0
JFME01000204 979 0
JFME01000263 944 0
JFME01000028 916 0
JFME01000223 887 0
JFME01000158 884 0
JFME01000059 877 0
JFME01000266 875 0
JFME01000203 870 0
JFME01000088 849 0
JFME01000200 835 0
JFME01000197 820 0
JFME01000264 811 0
JFME01000055 807 0
JFME01000133 789 0
JFME01000045 789 0
JFME01000196 771 0
JFME01000187 746 0
JFME01000180 724 0
JFME01000136 709 0
JFME01000147 703 0
JFME01000162 691 0
JFME01000171 690 0
JFME01000194 685 0
JFME01000132 663 0
JFME01000205 649 0
JFME01000035 645 0
JFME01000175 633 0
JFME01000108 632 0
JFME01000039 632 0
JFME01000062 631 0
JFME01000240 604 0
JFME01000037 603 0
JFME01000084 589 0
JFME01000218 589 0
JFME01000219 584 0
JFME01000199 580 0
JFME01000050 576 0
JFME01000294 574 0
JFME01000049 574 0
JFME01000259 552 0
JFME01000225 549 0
JFME01000265 548 0
JFME01000234 526 0
JFME01000134 519 0
JFME01000293 518 0
JFME01000154 516 0
JFME01000125 514 0
JFME01000202 510 0
JFME01000275 507 0
JFME01000269 507 0
JFME01000280 506 0
JFME01000080 497 0
JFME01000082 493 0
JFME01000222 493 0
JFME01000267 484 0
JFME01000008 484 0
JFME01000031 483 0
JFME01000032 481 0
JFME01000033 477 0
JFME01000022 477 0
JFME01000212 476 0
JFME01000277 475 0
JFME01000216 467 0
JFME01000295 459 0
JFME01000044 459 0
JFME01000023 454 0
JFME01000067 450 0
JFME01000123 445 0
JFME01000208 445 0
JFME01000131 441 0
JFME01000271 441 0
JFME01000110 440 0
JFME01000124 434 0
JFME01000184 427 0
JFME01000296 422 0
JFME01000278 408 0
JFME01000020 407 0
JFME01000157 405 0
JFME01000229 403 0
JFME01000064 397 0
JFME01000206 396 0
JFME01000224 388 0
JFME01000071 388 0
JFME01000092 387 0
JFME01000211 387 0
JFME01000232 380 0
JFME01000257 378 0
JFME01000270 377 0
JFME01000144 372 0
JFME01000074 369 0
JFME01000087 367 0
JFME01000030 364 0
JFME01000282 364 0
JFME01000100 363 0
JFME01000097 362 0
JFME01000215 361 0
JFME01000007 361 0
JFME01000274 359 0
JFME01000078 359 0
JFME01000126 356 0
JFME01000256 354 0
JFME01000210 353 0
JFME01000289 352 0
JFME01000098 349 0
JFME01000156 349 0
JFME01000069 348 0
JFME01000128 347 0
JFME01000250 346 0
JFME01000286 346 0
JFME01000239 344 0
JFME01000107 344 0
JFME01000019 344 0
JFME01000027 344 0
JFME01000086 343 0
JFME01000101 339 0
JFME01000053 334 0
JFME01000115 333 0
JFME01000214 333 0
JFME01000130 331 0
JFME01000075 330 0
JFME01000255 329 0
JFME01000268 328 0
JFME01000077 326 0
JFME01000201 325 0
JFME01000106 322 0
JFME01000168 321 0
JFME01000140 321 0
JFME01000010 321 0
JFME01000207 320 0
JFME01000283 319 0
JFME01000046 316 0
JFME01000290 311 0
JFME01000142 311 0
JFME01000105 305 0
JFME01000127 305 0
JFME01000185 304 0
JFME01000291 304 0
JFME01000122 302 0
JFME01000038 298 0
JFME01000153 297 0
JFME01000006 297 0
JFME01000057 296 0
JFME01000195 296 0
JFME01000121 296 0
JFME01000161 294 0
JFME01000056 294 0
JFME01000061 293 0
JFME01000096 287 0
JFME01000051 284 0
JFME01000017 277 0
JFME01000112 277 0
JFME01000139 276 0
JFME01000104 276 0
JFME01000081 275 0
JFME01000113 274 0
JFME01000118 274 0
JFME01000114 273 0
JFME01000079 272 0
JFME01000281 272 0
JFME01000068 271 0
JFME01000284 271 0
JFME01000135 271 0
JFME01000292 270 0
JFME01000148 269 0
JFME01000235 269 0
JFME01000288 268 0
JFME01000091 261 0
JFME01000129 261 0
JFME01000089 260 0
JFME01000066 258 0
JFME01000209 257 0
JFME01000076 257 0
JFME01000021 257 0
JFME01000254 256 0
JFME01000230 255 0
JFME01000111 254 0
JFME01000272 254 0
JFME01000016 253 0
JFME01000182 253 0
JFME01000287 251 0
JFME01000117 250 0
JFME01000052 250 0
JFME01000025 249 0
JFME01000102 248 0
JFME01000099 247 0
JFME01000015 247 0
JFME01000137 247 0
JFME01000009 246 0
JFME01000152 245 0
JFME01000005 244 0
JFME01000190 244 0
JFME01000220 242 0
JFME01000029 242 0
JFME01000085 241 0
JFME01000063 240 0
JFME01000151 237 0
JFME01000072 237 0
JFME01000014 236 0
JFME01000093 236 0
JFME01000233 235 0
JFME01000003 234 0
JFME01000258 234 0
JFME01000036 234 0
JFME01000119 233 0
JFME01000004 233 0
JFME01000260 232 0
JFME01000262 232 0
JFME01000221 231 0
JFME01000276 231 0
JFME01000120 230 0
JFME01000138 230 0
JFME01000231 228 0
JFME01000150 225 0
JFME01000213 222 0
JFME01000238 220 0
JFME01000285 218 0
JFME01000279 218 0
JFME01000236 216 0
JFME01000192 216 0
JFME01000251 215 0
JFME01000103 214 0
JFME01000261 212 0
JFME01000083 212 0
JFME01000143 212 0
JFME01000095 212 0
JFME01000065 210 0
JFME01000018 210 0
JFME01000026 207 0
JFME01000217 207 0
JFME01000253 207 0
JFME01000070 206 0
JFME01000024 206 0
JFME01000116 205 0
JFME01000237 204 0
JFME01000198 203 0
JFME01000141 202 0
JFME01000252 201 0
JFME01000273 200 0
JFME01000073 200 0
JFME01000013 200 0
Total 1,378,315 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634915.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634915.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634915.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634915.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634915.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634915.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634915.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634915.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634915.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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