cyanobase » Prochlorococcus sp. scB243_496E10

Prochlorococcus sp. scB243_496E10

Summary

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Data source name GCA_000634895.1
Full name Prochlorococcus sp. scB243_496E10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMD01000013 164,068 0
JFMD01000036 91,439 0
JFMD01000022 73,871 0
JFMD01000021 68,089 0
JFMD01000019 63,934 0
JFMD01000287 56,745 0
JFMD01000297 53,091 0
JFMD01000147 45,057 0
JFMD01000002 43,182 0
JFMD01000020 33,591 0
JFMD01000106 25,904 0
JFMD01000115 15,626 0
JFMD01000188 14,588 0
JFMD01000003 11,452 0
JFMD01000148 11,251 0
JFMD01000026 9,575 0
JFMD01000104 7,893 0
JFMD01000291 7,508 0
JFMD01000105 7,162 0
JFMD01000145 7,046 0
JFMD01000035 7,036 0
JFMD01000298 5,983 0
JFMD01000001 5,760 0
JFMD01000107 5,749 0
JFMD01000286 5,100 0
JFMD01000144 4,824 0
JFMD01000299 4,806 0
JFMD01000300 4,777 0
JFMD01000238 4,484 0
JFMD01000229 4,481 0
JFMD01000284 4,247 0
JFMD01000037 4,018 0
JFMD01000327 4,008 0
JFMD01000149 3,948 0
JFMD01000146 3,674 0
JFMD01000240 3,610 0
JFMD01000283 3,582 0
JFMD01000379 3,334 0
JFMD01000239 3,328 0
JFMD01000132 3,213 0
JFMD01000112 3,184 0
JFMD01000289 3,167 0
JFMD01000114 2,870 0
JFMD01000296 2,669 0
JFMD01000205 2,343 0
JFMD01000378 2,302 0
JFMD01000025 2,196 0
JFMD01000231 2,106 0
JFMD01000329 2,037 0
JFMD01000189 2,020 0
JFMD01000381 1,966 0
JFMD01000233 1,934 0
JFMD01000285 1,931 0
JFMD01000210 1,787 0
JFMD01000199 1,746 0
JFMD01000332 1,716 0
JFMD01000196 1,665 0
JFMD01000217 1,610 0
JFMD01000103 1,522 0
JFMD01000400 1,476 0
JFMD01000282 1,470 0
JFMD01000326 1,442 0
JFMD01000180 1,435 0
JFMD01000109 1,423 0
JFMD01000334 1,418 0
JFMD01000277 1,374 0
JFMD01000221 1,347 0
JFMD01000328 1,322 0
JFMD01000122 1,320 0
JFMD01000333 1,298 0
JFMD01000232 1,258 0
JFMD01000039 1,257 0
JFMD01000338 1,185 0
JFMD01000330 1,165 0
JFMD01000336 1,122 0
JFMD01000266 1,094 0
JFMD01000275 1,086 0
JFMD01000382 1,037 0
JFMD01000243 1,032 0
JFMD01000290 1,024 0
JFMD01000195 1,023 0
JFMD01000310 970 0
JFMD01000288 940 0
JFMD01000399 930 0
JFMD01000023 914 0
JFMD01000012 914 0
JFMD01000228 883 0
JFMD01000014 872 0
JFMD01000223 853 0
JFMD01000044 834 0
JFMD01000305 821 0
JFMD01000230 807 0
JFMD01000360 801 0
JFMD01000190 790 0
JFMD01000404 763 0
JFMD01000241 762 0
JFMD01000406 758 0
JFMD01000276 755 0
JFMD01000090 754 0
JFMD01000235 753 0
JFMD01000279 752 0
JFMD01000202 749 0
JFMD01000331 740 0
JFMD01000197 737 0
JFMD01000268 736 0
JFMD01000135 732 0
JFMD01000335 727 0
JFMD01000181 721 0
JFMD01000337 721 0
JFMD01000341 709 0
JFMD01000345 698 0
JFMD01000045 698 0
JFMD01000154 697 0
JFMD01000192 693 0
JFMD01000027 679 0
JFMD01000129 673 0
JFMD01000218 646 0
JFMD01000347 636 0
JFMD01000050 633 0
JFMD01000358 630 0
JFMD01000401 622 0
JFMD01000353 620 0
JFMD01000184 616 0
JFMD01000162 614 0
JFMD01000046 613 0
JFMD01000055 608 0
JFMD01000102 607 0
JFMD01000207 601 0
JFMD01000078 599 0
JFMD01000088 599 0
JFMD01000403 583 0
JFMD01000219 580 0
JFMD01000212 568 0
JFMD01000155 561 0
JFMD01000150 555 0
JFMD01000128 555 0
JFMD01000024 550 0
JFMD01000244 548 0
JFMD01000339 547 0
JFMD01000359 541 0
JFMD01000079 541 0
JFMD01000391 539 0
JFMD01000134 532 0
JFMD01000131 526 0
JFMD01000187 526 0
JFMD01000402 520 0
JFMD01000312 519 0
JFMD01000127 517 0
JFMD01000089 514 0
JFMD01000101 513 0
JFMD01000167 509 0
JFMD01000380 507 0
JFMD01000350 504 0
JFMD01000076 502 0
JFMD01000163 501 0
JFMD01000084 498 0
JFMD01000383 497 0
JFMD01000005 497 0
JFMD01000139 497 0
JFMD01000340 495 0
JFMD01000007 495 0
JFMD01000200 492 0
JFMD01000009 491 0
JFMD01000265 488 0
JFMD01000351 486 0
JFMD01000349 479 0
JFMD01000264 476 0
JFMD01000394 476 0
JFMD01000357 475 0
JFMD01000179 472 0
JFMD01000182 471 0
JFMD01000152 469 0
JFMD01000292 468 0
JFMD01000355 466 0
JFMD01000343 463 0
JFMD01000100 461 0
JFMD01000172 458 0
JFMD01000361 451 0
JFMD01000306 449 0
JFMD01000086 446 0
JFMD01000010 446 0
JFMD01000356 442 0
JFMD01000006 438 0
JFMD01000093 437 0
JFMD01000125 437 0
JFMD01000176 436 0
JFMD01000364 435 0
JFMD01000040 435 0
JFMD01000214 435 0
JFMD01000118 431 0
JFMD01000206 428 0
JFMD01000193 426 0
JFMD01000344 422 0
JFMD01000302 422 0
JFMD01000224 419 0
JFMD01000120 417 0
JFMD01000226 413 0
JFMD01000363 413 0
JFMD01000213 409 0
JFMD01000365 406 0
JFMD01000369 404 0
JFMD01000405 401 0
JFMD01000348 401 0
JFMD01000295 397 0
JFMD01000366 394 0
JFMD01000099 393 0
JFMD01000374 392 0
JFMD01000136 391 0
JFMD01000049 389 0
JFMD01000123 388 0
JFMD01000137 387 0
JFMD01000065 387 0
JFMD01000280 386 0
JFMD01000388 384 0
JFMD01000073 381 0
JFMD01000246 373 0
JFMD01000057 372 0
JFMD01000316 369 0
JFMD01000048 368 0
JFMD01000362 367 0
JFMD01000191 365 0
JFMD01000376 362 0
JFMD01000204 359 0
JFMD01000178 358 0
JFMD01000042 357 0
JFMD01000119 356 0
JFMD01000060 352 0
JFMD01000342 352 0
JFMD01000201 351 0
JFMD01000051 351 0
JFMD01000408 346 0
JFMD01000194 345 0
JFMD01000245 345 0
JFMD01000069 344 0
JFMD01000124 342 0
JFMD01000098 342 0
JFMD01000111 340 0
JFMD01000370 339 0
JFMD01000256 338 0
JFMD01000087 336 0
JFMD01000411 335 0
JFMD01000110 333 0
JFMD01000074 330 0
JFMD01000186 329 0
JFMD01000174 329 0
JFMD01000281 329 0
JFMD01000141 329 0
JFMD01000156 328 0
JFMD01000064 326 0
JFMD01000271 326 0
JFMD01000377 325 0
JFMD01000092 323 0
JFMD01000066 319 0
JFMD01000270 318 0
JFMD01000252 317 0
JFMD01000395 317 0
JFMD01000017 317 0
JFMD01000251 316 0
JFMD01000346 315 0
JFMD01000215 315 0
JFMD01000386 314 0
JFMD01000030 312 0
JFMD01000094 311 0
JFMD01000068 311 0
JFMD01000254 310 0
JFMD01000301 309 0
JFMD01000091 308 0
JFMD01000373 308 0
JFMD01000303 307 0
JFMD01000097 304 0
JFMD01000011 304 0
JFMD01000061 302 0
JFMD01000293 300 0
JFMD01000258 299 0
JFMD01000242 299 0
JFMD01000121 298 0
JFMD01000157 297 0
JFMD01000198 295 0
JFMD01000398 295 0
JFMD01000056 294 0
JFMD01000083 289 0
JFMD01000410 289 0
JFMD01000063 287 0
JFMD01000070 285 0
JFMD01000095 285 0
JFMD01000392 284 0
JFMD01000222 281 0
JFMD01000130 281 0
JFMD01000008 280 0
JFMD01000077 279 0
JFMD01000313 278 0
JFMD01000033 277 0
JFMD01000041 275 0
JFMD01000164 274 0
JFMD01000208 273 0
JFMD01000372 273 0
JFMD01000158 270 0
JFMD01000004 270 0
JFMD01000126 270 0
JFMD01000059 270 0
JFMD01000116 269 0
JFMD01000261 269 0
JFMD01000354 268 0
JFMD01000165 267 0
JFMD01000173 264 0
JFMD01000143 264 0
JFMD01000396 263 0
JFMD01000389 263 0
JFMD01000324 263 0
JFMD01000250 262 0
JFMD01000053 262 0
JFMD01000311 261 0
JFMD01000170 260 0
JFMD01000047 259 0
JFMD01000397 258 0
JFMD01000227 257 0
JFMD01000082 257 0
JFMD01000169 256 0
JFMD01000234 255 0
JFMD01000248 254 0
JFMD01000031 254 0
JFMD01000177 254 0
JFMD01000153 253 0
JFMD01000071 253 0
JFMD01000054 253 0
JFMD01000322 252 0
JFMD01000138 251 0
JFMD01000269 249 0
JFMD01000367 249 0
JFMD01000272 249 0
JFMD01000294 249 0
JFMD01000368 248 0
JFMD01000220 247 0
JFMD01000387 247 0
JFMD01000166 247 0
JFMD01000375 246 0
JFMD01000142 243 0
JFMD01000278 243 0
JFMD01000384 242 0
JFMD01000315 242 0
JFMD01000216 242 0
JFMD01000253 241 0
JFMD01000307 240 0
JFMD01000072 237 0
JFMD01000081 236 0
JFMD01000032 235 0
JFMD01000038 235 0
JFMD01000314 234 0
JFMD01000247 234 0
JFMD01000257 234 0
JFMD01000185 232 0
JFMD01000161 231 0
JFMD01000211 231 0
JFMD01000160 230 0
JFMD01000029 230 0
JFMD01000407 230 0
JFMD01000183 230 0
JFMD01000317 229 0
JFMD01000209 228 0
JFMD01000203 228 0
JFMD01000085 227 0
JFMD01000237 227 0
JFMD01000067 227 0
JFMD01000171 227 0
JFMD01000273 227 0
JFMD01000133 226 0
JFMD01000018 224 0
JFMD01000028 224 0
JFMD01000308 224 0
JFMD01000321 223 0
JFMD01000325 223 0
JFMD01000151 222 0
JFMD01000259 222 0
JFMD01000236 222 0
JFMD01000058 221 0
JFMD01000304 221 0
JFMD01000260 220 0
JFMD01000080 220 0
JFMD01000385 219 0
JFMD01000140 219 0
JFMD01000043 218 0
JFMD01000320 216 0
JFMD01000309 216 0
JFMD01000168 215 0
JFMD01000016 215 0
JFMD01000393 214 0
JFMD01000323 213 0
JFMD01000263 211 0
JFMD01000352 211 0
JFMD01000319 211 0
JFMD01000409 211 0
JFMD01000225 210 0
JFMD01000274 210 0
JFMD01000318 209 0
JFMD01000390 209 0
JFMD01000371 208 0
JFMD01000159 208 0
JFMD01000267 208 0
JFMD01000075 206 0
JFMD01000262 204 0
JFMD01000113 204 0
JFMD01000062 204 0
JFMD01000249 204 0
JFMD01000096 203 0
JFMD01000015 203 0
JFMD01000255 203 0
JFMD01000034 203 0
JFMD01000175 202 0
JFMD01000117 202 0
JFMD01000108 202 0
JFMD01000052 201 0
Total 1,097,829 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634895.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634895.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634895.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634895.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634895.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634895.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634895.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634895.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634895.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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